Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0238 ATGGTTAAACATGGGCCTTGCTATCACTGTGGAGTTACAAACACACCACTTTGGCGCAATGGACCACCAGAGAAGCCAGTACTATGCAATGCATGTGGGTCTCGATGGAGAACAAAGGGAACACTTGCAAATTATACCCCTTTACATGCTCGGGCAGAAATTGATGATAATGAGGATAAAAGGATTTGCAGGGTAAAGAGCATATCATTAAATAAGAACAAGGAAGAGAAATTGCTCAAACGAAAGCAGAACCCTGATAATGTAGTATCTGGATGGGTTGCCCCTGATTACAACCAGGGATTCAGAAAGGTTACAGATGAAGATACAAGCAATAGATCAAGTTCAGGATCAGCTGTCTCTAACTCAGAGAGCTGCGCTCAATTTGGTGGAACAGATGGTAGTGATTTGACAGGTCCTGCACAGTCGGTTGTGTGGGATGCCATGGTGCCGTCAAAAAAGAGGACGTGTGTAAGCCGTCAAAAGCCATCTCCCGTTGAGAAGCTCACAAAAGATTTATATACTATTCTTCACGAACAACAATCTTATTTCTCTGCATCTTCTGAAGAGGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTCATTCGGCATCCTAGCTCTATAGCTCGTGAAGAAGAATCTGAGGCTAGCTCCCTTTCAGTTGATATCAAACAATGCCCAGCGAGTGATGCATATTCATGCTCTGGTGCCATTCTTATGCATAATGATTTCAGTGGCATGACCTTTCCATCTCAGGGAGTTGAAAAAATCATATACTCTGCTGGCCAAGGAATTCCGCAGGAGAAACTTAAAAGGGACAAGCTTCAGAATGAAAGTGTACAAATCCTTGGATATCATAGTTCACCACTGTGCTTCATAGATTTAAATGATGTTGTAAACTATGAGGAATTTATGAGAAACTTGACAATTGAAGAGCAGCAACAATTACTGAAGTGTCTTCCAGTGGTTGATACAGCTATACTTCCCGACAGCCTTAAAAGCATGTTCAATAGCTCTCAATTTAAGGAGAACTTAACTTACTTTCAGCAGCTGCTCGTGGAAGGTGTCTTTGACATCACCTTATCTGTGGCAAAACCTGAAGACTGCAAGACTTTGAAAAGGCTTGCATTATCCAACTTTTCACAGTCAAAATGGGTGGAACAATATGATTTATTTAAGAGGTGTAACAACAGAGCTGAAAAATCTGTTGCTCTGGGATCTACTGGGACATCATCAAGTAATGTTGCCAATGTGAAGAGAGTGCGTGACAGCCCAAAACAAAATTTCCCTGAACTGAAGACAACAGTCTGGAGCCCCAAAAGGGTGATCATGAAGCCTGGCTTCGAGGGCAAGGAAGTTTTAGAAGATGGCTCTTGCTTCAGTCCAAAAAGCCTATTTGCTTTGCCTCCTGATGGTAGCTCGCTCATGCTGGATTCTTTCAACTTTGTTGAGGAGAGTTCTGATCAGGATCTGCTGCTAGAAGTGCGATCTAACAGTTCTTTTCCTCAGGCAGAGCTACTGCACCCAACTTTAAGCTTTGGTGCCCAAGCCAGCACCAGTAGTAGCTCAGTATACCCACATCTTGCCCATCACTGA 1623 0.4282 MVKHGPCYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEIDDNEDKRICRVKSISLNKNKEEKLLKRKQNPDNVVSGWVAPDYNQGFRKVTDEDTSNRSSSGSAVSNSESCAQFGGTDGSDLTGPAQSVVWDAMVPSKKRTCVSRQKPSPVEKLTKDLYTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVDIKQCPASDAYSCSGAILMHNDFSGMTFPSQGVEKIIYSAGQGIPQEKLKRDKLQNESVQILGYHSSPLCFIDLNDVVNYEEFMRNLTIEEQQQLLKCLPVVDTAILPDSLKSMFNSSQFKENLTYFQQLLVEGVFDITLSVAKPEDCKTLKRLALSNFSQSKWVEQYDLFKRCNNRAEKSVALGSTGTSSSNVANVKRVRDSPKQNFPELKTTVWSPKRVIMKPGFEGKEVLEDGSCFSPKSLFALPPDGSSLMLDSFNFVEESSDQDLLLEVRSNSSFPQAELLHPTLSFGAQASTSSSSVYPHLAHH 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0238 540 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Glsi09g0238 540 Pfam Asx homology domain 285 367 IPR028020 -
Glsi09g0238 540 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 45 - -
Glsi09g0238 540 MobiDBLite consensus disorder prediction 103 139 - -
Glsi09g0238 540 MobiDBLite consensus disorder prediction 110 138 - -
Glsi09g0238 540 CDD ZnF_GATA 6 61 IPR000679 GO:0006355|GO:0043565
Glsi09g0238 540 PANTHER OSJNBB0038F03.10 PROTEIN 7 536 IPR044589 -
Glsi09g0238 540 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 406 IPR044867 -
Glsi09g0238 540 Gene3D - 4 86 IPR013088 GO:0006355|GO:0008270
Glsi09g0238 540 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Glsi09g0238 540 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Glsi09g0238 540 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0238 Glsi-ChrGlsi09 1726888 1733120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0238 1 517 C2C2-Gata Transcription Factor Family AT4G17570 54.409 4.99e-157 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi09g0238 ASXH 1.3e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1854 05 66109475 66115917 Glsi09g0238 09 1726888 1733120 CCT