Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0220 ATGTCCACAATCGTTGTATCTGCATTGCCTGATAGTGATCCGTCACTTCATGCACCTACTCCCCTATTTATACCCAAACCCTTCTTTCCCTTCTCCCTTCGAATATTCAATACCTACTCGATCCAATCCCTTCCTTCTCTATCTCTCTCTCTCTCACTGCTCCAAAATTACGACATGTACGAACCAAGTGCCTACGAGTCCGATTTAGCCTTGCTGGAGACCATTCGCTGCCACTTACTCGGCGATTCCGACAACCTATTCGCAGCTCCCGTCGCTTCTTTGGGGTACGCTCCGGTTTACTCTCGGACCTCCAGTTTCAGCAGTCTGTACCCTTGCTTGACCGACAATTGGGGCGAATTGCCCCTCAAAGAGGACGATTCCGAGGACATGGTTCTCTACGGTGTTCTTCGGGACGCCCTCAGCGTTGGCTGGGTCCCGTCCCTCGATGCTGCCTCCCCCGAAACCATCTCCTCGGGTTTTACTTCCACCGTTCAAGTGAAATCGGAGCCCGATGTCTCACCGTCACCCCAGGAGTCCGCGCTGAGTCCTCCAGTGATTCCGGAAGAGAAGGCTGTACCGGCAGTCGTCCCGGCAAAGGGGAAGCATTACCGAGGCGTACGGCAGCGGCCGTGGGGGAAATTCGCGGCGGAGATCCGTGATCCGGCAAAGAATGGGGCGAGGGTTTGGCTTGGAACATTTGAAACAGCGGAGGACGCAGCGCTGGCTTACGATCGAGCGGCGTACCGGATGCGGGGTTCGCGAGCCCTTCTGAATTTTCCTCTGCGAGTGAATTCGGGTGAACCAGACCCGGTGAGAGTGACTTCGAAGAGGTCATCGCCGGAGCCATCTTCGTCATCGGAGAGTGGGATGTCGGGGAAGAGAAGGAAGAAGGTGGTAGTGGGGCCAAGGGCGACAGCTGGAGTTGGATTGAAAACGGGGCAAGTGGTAGGCAAGTGGGTTCATCGTGCCTACATGGGGAAGGATTATTGGTCAGCTAATGCGTAA 1005 0.5542 MSTIVVSALPDSDPSLHAPTPLFIPKPFFPFSLRIFNTYSIQSLPSLSLSLSLLQNYDMYEPSAYESDLALLETIRCHLLGDSDNLFAAPVASLGYAPVYSRTSSFSSLYPCLTDNWGELPLKEDDSEDMVLYGVLRDALSVGWVPSLDAASPETISSGFTSTVQVKSEPDVSPSPQESALSPPVIPEEKAVPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSPEPSSSSESGMSGKRRKKVVVGPRATAGVGLKTGQVVGKWVHRAYMGKDYWSANA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0220 334 PRINTS Ethylene responsive element binding protein signature 203 214 IPR001471 GO:0003700|GO:0006355
Glsi09g0220 334 PRINTS Ethylene responsive element binding protein signature 226 242 IPR001471 GO:0003700|GO:0006355
Glsi09g0220 334 PANTHER DNA-BINDING DOMAIN 178 287 IPR044808 GO:0003700|GO:0009873
Glsi09g0220 334 MobiDBLite consensus disorder prediction 161 183 - -
Glsi09g0220 334 Gene3D AP2/ERF domain 201 263 IPR036955 GO:0003700|GO:0006355
Glsi09g0220 334 SUPERFAMILY DNA-binding domain 202 262 IPR016177 GO:0003677
Glsi09g0220 334 FunFam Ethylene-responsive transcription factor 2 201 261 - -
Glsi09g0220 334 CDD AP2 201 260 IPR001471 GO:0003700|GO:0006355
Glsi09g0220 334 MobiDBLite consensus disorder prediction 161 179 - -
Glsi09g0220 334 ProSiteProfiles AP2/ERF domain profile. 202 260 IPR001471 GO:0003700|GO:0006355
Glsi09g0220 334 Pfam AP2 domain 202 252 IPR001471 GO:0003700|GO:0006355
Glsi09g0220 334 SMART rav1_2 202 266 IPR001471 GO:0003700|GO:0006355
Glsi09g0220 334 MobiDBLite consensus disorder prediction 266 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0220 Glsi-ChrGlsi09 1639353 1640687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0220 66 316 AP2-EREBP Transcription Factor Family AT4G17500 58.555 1.50e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi09g0220 AP2 1.5e-14 CL0081