LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi09g0218	ATGGCGAACGCAGTTGAAGTTTCGGCCCTCAAACGCATAAAATTGCATCTTTTAGGTGAACTCTCTCCAGTGGTGACTTTCTCCTCTGGCCATAACAGCTCAGCAGACGATGCTACCCAAAAGTTCTGGTTTGATGAAGCAAACCCAGCAGTTTCCAGCTCTCACTCTGACTCTCTTGGTTCTCAATCATCGAGTGCTGACTCTTGTATAACGGTTTCCGATTACTTCGATGACTTTTTCGACTTCCCAACCAATTCCATATCTTCAACAGAAAATCAGATTAATCTATTTGAATTTGAGTCAAACAACCAAGTGATTGACCTCTCATCGCCAAAATCCCAAACGGAAACTTCGCTATTCGACAGCAATGTTTCCAAATTGGAATCAAATTCACAGGTAACGTCAAATCCTAGCTCACAGTCCGGCAGTTGCATGTTCGAGTTTGAACCTAGACCTCAAACCGTCAAGAAAAAAGTTCAATCTAATCGAAAACTATCGTTGCAAATCTCGCTTCCGAAGAAGACCGAGTGGATCCAATTTGGGAACCCGAGTCAACAAGAGGAGGTTCCGGAAATCGTGGTGCAGAAGCAGAATAATTCAAACCCCGGAGAGAAAAAGCATTACAGAGGGGTCAGACAGAGGCCGTGGGGCAAGTACGCAGCCGAGATTCGTGACCCGAACAAGCGTGGGTCGAGGGTGTGGCTGGGAACATTCGAAACAGCTATCGAAGCCGCCAAAGCCTACGACCGAGCTGCGTTTAAGCTCCGCGGGTCCAAAGCCATCCTGAATTTCCCGCTGGAAGCAGGGAGGCCCGGGTCGGTGGTCGGGGCGGAGGTGAGAAAACGCCGGCGTGAGGATGAGGCGGAGACGGAAGTAAAGGTAGAGGCGGTGGGGAAGAAGGAGAAAACGACGGAATGTGACGTGAAAAGTATTAAGGACATTCCATTAACGCCGTCTAGTTGGACTGGGTTCTGGGACAACGAGATAAAGGAAATTTTCACGGTCCCGCTGCTGTCACCGTTATCTCCCCATCCGTCATTGAGTTATCCACAGCTTATGGTTGTATGA	1068	0.486	MANAVEVSALKRIKLHLLGELSPVVTFSSGHNSSADDATQKFWFDEANPAVSSSHSDSLGSQSSSADSCITVSDYFDDFFDFPTNSISSTENQINLFEFESNNQVIDLSSPKSQTETSLFDSNVSKLESNSQVTSNPSSQSGSCMFEFEPRPQTVKKKVQSNRKLSLQISLPKKTEWIQFGNPSQQEEVPEIVVQKQNNSNPGEKKHYRGVRQRPWGKYAAEIRDPNKRGSRVWLGTFETAIEAAKAYDRAAFKLRGSKAILNFPLEAGRPGSVVGAEVRKRRREDEAETEVKVEAVGKKEKTTECDVKSIKDIPLTPSSWTGFWDNEIKEIFTVPLLSPLSPHPSLSYPQLMVV	355

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi09g0218	355	MobiDBLite	consensus disorder prediction	117	144	-	-
	Glsi09g0218	355	FunFam	Ethylene-responsive transcription factor 2	206	267	-	-
	Glsi09g0218	355	Pfam	AP2 domain	207	257	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0218	355	SMART	rav1_2	207	271	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0218	355	PRINTS	Ethylene responsive element binding protein signature	208	219	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0218	355	PRINTS	Ethylene responsive element binding protein signature	247	267	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0218	355	Gene3D	AP2/ERF domain	206	267	IPR036955	GO:0003700\|GO:0006355
	Glsi09g0218	355	SUPERFAMILY	DNA-binding domain	207	266	IPR016177	GO:0003677
	Glsi09g0218	355	ProSiteProfiles	AP2/ERF domain profile.	207	265	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0218	355	CDD	AP2	206	265	IPR001471	GO:0003700\|GO:0006355
	Glsi09g0218	355	PANTHER	DNA-BINDING DOMAIN	139	285	IPR044808	GO:0003700\|GO:0009873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi09g0218	Glsi-ChrGlsi09	1631349	1632416	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi09g0218	104	355	AP2-EREBP Transcription Factor Family	AT5G47230	49.804	1.42e-65	208

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi09g0218		AP2	3.3e-15	CL0081