Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0216 ATGCGGTTGTTCCCTTTGAACTGGAGCTCTAGTTCGAACTCGGAAAGGGAGCAAAATATTGAGAAAAAGAATCGTGCTATGGTGTATCTCAATGTATATGATCTTACACCTATAAATAATTATCTTTACCTGTTTGGGCTTGGAATCTTTCATTCGGGTATAGAAGTGCATGGTATGGAATATGGCTTTGGAGCACATGAATACCCAACTAGTGGAGTATTTGAGGTTGAACCTAGAAGCTGCCCTGGCTTCATCTTCAGACGATCAGTGTTGTTGGGCAACACTGATATGTCTCATTCAGAATTTCATTCTTTCATGGAACGCCTCTCTTCCAAATATCATGGAGACACTTACCATTTGATTGCCAAGAATTGCAACCATTTCACAGATGAAGTCTGCCAACAGCTAACTGGAAAGCCTATTCCTGCATGGGTAAATCGGATGGCTCGTGTAGGTTCTTTCTGCAATTGTCTTCTGCCAGAAAGCCTTCAGGTTGCTGCAGTTAGACATCTTCCCGAACGTCTAACATATTCTGACGAGGAAGGATCAGAATCTGGGTCGTCTGCGTCAATAGAGAGTGAAGAGGAGGAGCCAAATCATCATCTGCTAACTGCATCTAATGGTGACGTGGCCTTTCTGAAGGAAAAACCAGTGCGGCTAGCTCGGGAGGCGGCCGTCCCTATTTTGTCTTCCTCATCCCTTCGTCGACGTGCCAAATATATTGGCATTAGTGTCTGCTTAAGTCTCCTGACCTTGAATCTTTTGCATTCTCAAGTGATGGGTGCATTCATTTTCCTCATCCTCTTCTGGGTTTCCATCTTCCAAAGTTTTATCGAGTTGCTGAATGCAAATTGCCCTGCAACAAAGTGCAGTGATGGTGGTCCGGATATCTGTTATCCTTTTCAGATAACATGGCAACAGCCTAAGTATCAGGTACCCTCTGGTTTTGAGCTGCTTTGCAAAAACAACCTCACCACTATTCACTTTCCATCTTATGGGGATTTTGTAGTGAAGTCCATTTCCTACGACAAGAAAAAAATTGATATTCTTGACCCGAAAAATTGTGCCCACCATGTCTTTCTTAATCTTGATCTCTCCCTTACGCCGTTCCACTATTATTATGTTCTAAAAAACTATACTTACCTGAATTGCTCGACTAGCCTTTCACCTCCTTTGATGGAGGTTCCCTGTTTAAGTGCCTCCAATTATCATATTTACACAGTGGACCCTTGGTTGTCTGTGCCGGGTTCATGTAAGGCAGTCAAAACCGTTGCAATCCCCTTCAAATATAGTCCTTATCTCTCAGATAACACTCTTGGTCTTGGATTAACGTGGGACTTGCCTGAATCTCAACACACCAAAACAGCAATCCAGAGCAGCAGAGTTGTACTTGTGAGCATCAGCATCTTTGTTTTTGCGATAGCAACACTACTAAGCATAAAGGTTCATTGGACGACGAGGAATTGCCGTGAGAAAGAAGCGCATTTGTTACAGAGCTTGTCAGAATTATAG 1512 0.4306 MRLFPLNWSSSSNSEREQNIEKKNRAMVYLNVYDLTPINNYLYLFGLGIFHSGIEVHGMEYGFGAHEYPTSGVFEVEPRSCPGFIFRRSVLLGNTDMSHSEFHSFMERLSSKYHGDTYHLIAKNCNHFTDEVCQQLTGKPIPAWVNRMARVGSFCNCLLPESLQVAAVRHLPERLTYSDEEGSESGSSASIESEEEEPNHHLLTASNGDVAFLKEKPVRLAREAAVPILSSSSLRRRAKYIGISVCLSLLTLNLLHSQVMGAFIFLILFWVSIFQSFIELLNANCPATKCSDGGPDICYPFQITWQQPKYQVPSGFELLCKNNLTTIHFPSYGDFVVKSISYDKKKIDILDPKNCAHHVFLNLDLSLTPFHYYYVLKNYTYLNCSTSLSPPLMEVPCLSASNYHIYTVDPWLSVPGSCKAVKTVAIPFKYSPYLSDNTLGLGLTWDLPESQHTKTAIQSSRVVLVSISIFVFAIATLLSIKVHWTTRNCREKEAHLLQSLSEL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0216 503 Gene3D PPPDE domains 20 170 IPR042266 -
Glsi09g0216 503 PANTHER DESUMOYLATING ISOPEPTIDASE 25 199 IPR008580 GO:0008233
Glsi09g0216 503 SMART DUF862_2a 26 164 IPR008580 GO:0008233
Glsi09g0216 503 Pfam PPPDE putative peptidase domain 27 161 IPR008580 GO:0008233
Glsi09g0216 503 Pfam Wall-associated receptor kinase galacturonan-binding 285 351 IPR025287 GO:0030247
Glsi09g0216 503 ProSiteProfiles PPPDE domain profile. 26 163 IPR008580 GO:0008233
Glsi09g0216 503 MobiDBLite consensus disorder prediction 176 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0216 Glsi-ChrGlsi09 1616000 1621109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0216 299 459 C3H Transcription Factor Family AT2G25410 30.409 4.88e-17 80.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1883 05 66243163 66248370 Glsi09g0216 09 1616000 1621109 CCT