Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0214 ATGCATATAGAGGAATTGGAGGGAGGAGCGGTTGTAGGTGGAGAGGAAGAAAAATCATATTTGGGGGATGGTGTCATCAGCGGGGCAAGCTTAGTCGTGACTGATGCGAAAAGGGTTCTGGTTGGAGCGGGGGCTCGTGCGCTCTTCTATCCCACTCTGCTTTACAATGTCATTAGGAATAAGTTTCAGGCCGAGTTTCGGTGGTGGGATAAGGTTGATGAGTTCATATTATTAGGTGCTGTTCCATTCCCTATGGATGTTCCCCGCTTAAAGGAGCTTGGCGTTGGTGGAGTTATCACATTGAATGAGTCATATGAGACTTTGGTTCCAACCACACTATATCATGCTCATGAAATTGACCATCTGGTTATTCCTACTAGAGATTACTGCTTTGCACCATCATTACGTGACATATGCCTTGGTGTGGACTTCATACATGAAAATGCATTGTCTGGGCGAACTACTTATGTCCACTGCAAAGCTGGGCGTGGTCGCAGCACAACTGTTGTTATCTGTTACCTGGTGCACCGCAAGATGATGACACCTGATGCTGCATATGATTATGTAAAGTCAATTAGGCCAAGGGTTCTTCTAGCTTCTTCTCAGTGGCAAGCTGTTCAGAAATACTACCACCTTATCGTTAGGAGGGCCATTGCCTACGGTCCCCCAGCCAATTTAATTCTGAAGGCATCTGAGGCTGCGGCAGCTTCACACGACCTTGTAACATTTGATGATGGTTCTGTAGTTGTGGTAACACAGTCAGATCTCGAAGGATACGACCCAAGTATTCAATCAGGTGCTGTAGCCAGTGAGATATGGGCAGATTTAAGTGCTGTTTACCGTGTTCGAGTTGCTGGGCAGGCAGCATTGGCAAGAATATCTTGGCTTGGTCTGCGATATCTTACACAACCGAAGATTTCTGCGAAGGAACCGAGCGGGGAGAGCAGCTGCTCAATCAGAACTAATCACTTGAGAGGCATTAGCTTTGATATACATGTGTACTGA 1005 0.4647 MHIEELEGGAVVGGEEEKSYLGDGVISGASLVVTDAKRVLVGAGARALFYPTLLYNVIRNKFQAEFRWWDKVDEFILLGAVPFPMDVPRLKELGVGGVITLNESYETLVPTTLYHAHEIDHLVIPTRDYCFAPSLRDICLGVDFIHENALSGRTTYVHCKAGRGRSTTVVICYLVHRKMMTPDAAYDYVKSIRPRVLLASSQWQAVQKYYHLIVRRAIAYGPPANLILKASEAAAASHDLVTFDDGSVVVVTQSDLEGYDPSIQSGAVASEIWADLSAVYRVRVAGQAALARISWLGLRYLTQPKISAKEPSGESSCSIRTNHLRGISFDIHVY 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0214 334 Pfam Dual specificity phosphatase, catalytic domain 88 210 IPR000340 GO:0008138|GO:0016311
Glsi09g0214 334 SMART dsp_5 71 212 IPR020422 GO:0006470|GO:0008138
Glsi09g0214 334 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 296 - -
Glsi09g0214 334 ProSitePatterns Tyrosine specific protein phosphatases active site. 157 167 IPR016130 GO:0016311|GO:0016791
Glsi09g0214 334 CDD PTPMT1 68 210 IPR044596 GO:0004721
Glsi09g0214 334 ProSiteProfiles Dual specificity protein phosphatase domain profile. 68 215 IPR020422 GO:0006470|GO:0008138
Glsi09g0214 334 FunFam Dual specificity phosphatase domain protein 68 215 - -
Glsi09g0214 334 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 63 213 IPR029021 -
Glsi09g0214 334 Gene3D Protein tyrosine phosphatase superfamily 68 217 IPR029021 -
Glsi09g0214 334 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 136 204 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0214 Glsi-ChrGlsi09 1606583 1610796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0214 25 334 Protein tyrosine phosphatase (PTP) family AT2G35680 59.190 3.21e-126 363