Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0209 ATGACTCGGCGATGCTCCCATTGCAGCCTCAATGGCCACAACTCCAGGACCTGCCCCAACCGTGGAGTCAAACTCTTTGGAGTCCGATTGACAGATGGCTCGATCAGGAAGAGTGCCAGTATGGGCAATCTTAGCCACTACGCTGGCTCCACTTCGGGGGCCCATCACGCCGGGGGTAACAATCCGGGTTCTCCCGGGGAGATGCCTGATCACGCGGCGGCCGCCGACGGTTATGCCTCCGAGGATTTTGTACCTGGGTCATCGTCAAGTTCCCGTGAAAGGAAAAAGGGTGTTCCATGGACTGAGGAGGAACATAGAATGTTTCTACTTGGATTACAGAAGCTTGGCAAAGGTGATTGGCGTGGAATTGCACGGAATTATGTTATATCAAGGACACCTACTCAAGTAGCTAGCCACGCTCAGAAATATTTCATCAGGCTAAGCAATGTATCTAGGCGAAAAAGACGATCCAGCTTGTTTGATATAGCTGCAGATGAATCAGCCGAGACACCAATAATACCACAAGACTTCTTGTCAGCTAATCAGCCAAAGGCTGAAACAGAAGGCAATAACCCCATGCCTGCTCCTCCAGCCCTTGATGAAGAGTGTGAATCCATGGATTCCGCTAATTCAAACGGAGAGTCTGCCTCTTTAAAGCCAGATCGCTCACAATCATCGTACCCAGTGCTATATCCTGCATACTTTTCTCCTGTCTTTCCTTTTCCGCTGCCCTACTGGTCAGGATACATTCCAGAGTCTGATAAGAAAGAGACACATGAAGTGCTGAAGCCAACTGCAGTGCATTCCAAGAGCCCAATCAATGTTGATGAACTGGTTGGTATGTCAAAACTGAGTTTGGGAGACTCCATTGGTGACTCTGGCCCCTCATCTCTGTCAATAAAACTCCTTGAAGGACCCTCTAGACAGTCAGCTTTTCATGCAACTCCAGCATGTGGTAGTTCGAACATGAATGGCAGTGCGATCCATGCAGTTTAA 996 0.491 MTRRCSHCSLNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLSHYAGSTSGAHHAGGNNPGSPGEMPDHAAAADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRLSNVSRRKRRSSLFDIAADESAETPIIPQDFLSANQPKAETEGNNPMPAPPALDEECESMDSANSNGESASLKPDRSQSSYPVLYPAYFSPVFPFPLPYWSGYIPESDKKETHEVLKPTAVHSKSPINVDELVGMSKLSLGDSIGDSGPSSLSIKLLEGPSRQSAFHATPACGSSNMNGSAIHAV 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0209 331 SMART sant 96 146 IPR001005 -
Glsi09g0209 331 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Glsi09g0209 331 PANTHER TRANSCRIPTION FACTOR KUA1 3 270 - -
Glsi09g0209 331 MobiDBLite consensus disorder prediction 44 100 - -
Glsi09g0209 331 CDD SANT 99 144 IPR001005 -
Glsi09g0209 331 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Glsi09g0209 331 SUPERFAMILY Homeodomain-like 94 149 IPR009057 -
Glsi09g0209 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Glsi09g0209 331 MobiDBLite consensus disorder prediction 205 222 - -
Glsi09g0209 331 Gene3D - 98 150 - -
Glsi09g0209 331 ProSiteProfiles SANT domain profile. 100 148 IPR017884 -
Glsi09g0209 331 MobiDBLite consensus disorder prediction 182 222 - -
Glsi09g0209 331 MobiDBLite consensus disorder prediction 44 58 - -
Glsi09g0209 331 FunFam transcription factor MYB1R1 98 149 - -
Glsi09g0209 331 NCBIfam myb-like DNA-binding domain, SHAQKYF class 95 146 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0209 Glsi-ChrGlsi09 1564236 1567152 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi09g0209 Myb_DNA-binding 1.1e-10 CL0123