Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0207 ATGCCCTTCTTCCCTATGGAAGAAGCTATCCTTATAGACAGTGAAGTTCAACCAACCGCCATTACTGCCTCTTCCTCCACGGCCCAACTCGAAGATAATAACAAGGTCGTCAAGAGAGGCGTGGATGGCAAGCACCCAACGTATCGCGGTGTACGTATGCGTCAATGGGGCAAATGGGTATCAGAAATCAGAGAGCCGAGGAAGAAATCAAGAATCTGGCTCGGCACTTTTCCTACGCCAGAGATGGCGGCTCGAGCTCATGACGTAGCGGCTCTTACAATCAAGGGCAGCTCAGCCGTCCTCAATTTCCCGGAATTTGCCGCAGAGCTTCCACGTCCGGCCAGCACATCCCCAAAGGACATCCAAGCCGCAGCCGCCAAGGCAGCTGCTATCAGTTACGAAGGAAGGCATGAAGCGGAATCGAAGGTGAGGCAAGGCATATCCTCCCACGACACTCAGGAATCGTCGAATTCACCGTCAAGGGATGAGGACGATACATTCTTGGACCTCCCTGATCTCTTAGTGGATGAGTTTCATTACTCGTCGCTGTGGGTGGGAGCCGGAGCTGAACAGCGAGAAGAGCCTTTCCTCTGGGACTCTTACTAG 606 0.533 MPFFPMEEAILIDSEVQPTAITASSSTAQLEDNNKVVKRGVDGKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALTIKGSSAVLNFPEFAAELPRPASTSPKDIQAAAAKAAAISYEGRHEAESKVRQGISSHDTQESSNSPSRDEDDTFLDLPDLLVDEFHYSSLWVGAGAEQREEPFLWDSY 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0207 201 MobiDBLite consensus disorder prediction 139 167 - -
Glsi09g0207 201 Pfam AP2 domain 46 96 IPR001471 GO:0003700|GO:0006355
Glsi09g0207 201 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Glsi09g0207 201 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Glsi09g0207 201 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Glsi09g0207 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 29 177 - -
Glsi09g0207 201 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Glsi09g0207 201 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Glsi09g0207 201 CDD AP2 48 105 IPR001471 GO:0003700|GO:0006355
Glsi09g0207 201 FunFam Ethylene-responsive transcription factor 2 46 105 - -
Glsi09g0207 201 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0207 Glsi-ChrGlsi09 1547778 1548383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0207 25 131 AP2-EREBP Transcription Factor Family AT5G11590 73.148 8.91e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi09g0207 AP2 8.6e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1898 05 66315471 66316085 Glsi09g0207 09 1547778 1548383 CCT