Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0206 ATGGCACCCAAGAACCAGTCATCAACTAAGAAAACTGTCAACAAAGGAGCTTGGACGCCAGAGGAAGATCAAAAACTAGCACACTACATTCAAATTCACGGGGCGAAGAGGTGGAAGACTATTGCAATCAAATCAGGACTAAAACGATGCGGCAAGAGTTGCAGGCTGCGATGGCTAAACTATCTCAGACCCAATATCAAGAGGGGAAACATTTCAGATGAGGAAGAGGATTTGATTCTTAGGCTTCACAAACTGCTGGGAAACAGGTGGTCATTGATAGCTGGGAGGCTTCCAGGACGAACAGACAATGAAATTAAGAACTACTGGAATTCTCATATGTGCAAAAAACTCAATCACAAACAGCAAAAACCAGAAACGTCAACAGCACGACAACATAGTGCTCTTGTAGAGAATGAGGACGCCTTTAATGGAAACGCAAGTGGGAACTCAGAAGTTAGCTTCGATGTGAACGAGTTCTTCGACTTCTCCACGGAAGGATCCTATGAGTTGGATTGGGAGAACACGTATCTACAACTTAATGACTATCAGTAA 552 0.4348 MAPKNQSSTKKTVNKGAWTPEEDQKLAHYIQIHGAKRWKTIAIKSGLKRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHMCKKLNHKQQKPETSTARQHSALVENEDAFNGNASGNSEVSFDVNEFFDFSTEGSYELDWENTYLQLNDYQ 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0206 183 Gene3D - 6 68 - -
Glsi09g0206 183 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Glsi09g0206 183 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Glsi09g0206 183 FunFam Transcription factor TT2 71 141 - -
Glsi09g0206 183 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Glsi09g0206 183 Gene3D - 71 140 - -
Glsi09g0206 183 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 6 136 - -
Glsi09g0206 183 CDD SANT 72 113 IPR001005 -
Glsi09g0206 183 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Glsi09g0206 183 FunFam MYB-related transcription factor 14 67 - -
Glsi09g0206 183 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Glsi09g0206 183 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Glsi09g0206 183 SMART sant 67 115 IPR001005 -
Glsi09g0206 183 SMART sant 14 64 IPR001005 -
Glsi09g0206 183 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Glsi09g0206 183 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0206 Glsi-ChrGlsi09 1534719 1535425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0206 15 164 MYB Transcription Factor Family AT5G40330 54.248 1.18e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi09g0206 Myb_DNA-binding 4.9e-17 CL0123