Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0194 ATGCCTCCTCTCTGGATCTGGCTGCAAGTGCTCTTGGTTTTCACTTCCTTATTTCATGCACTATCCGTGACATCTATAACTTACCGTGACTGTACCACCCAATCAATGCCTTCCACAAACTCATCCAAACAAAACCGCAGGTGGGTCGGACCCATCGGTCACCGTGTAATCACCGTTGATGTTAATGGTGGTGGCCATTTCCGGTCCGTCCAAGCCGCTGTCAATGCTGTCCCAGAGAACAATAGAGTGAATGTCCTTATTCAAATCGGTGCCGGATACTACATAGAGAAAGTAGTTGTGCCCGTGACGAAGGCGTACATTACGTTTGAGGGCGCGGGGAGGGATGTGACTGTGATAGAATGGCATGACAGAGCCAGTGACCCTGGTCCGAATGGGCAGCAACTCCGTACTTACAGAACAGCTTCCGTCACAGTTTTCGCCAACTTCTTCTCTGCTAGGAATATCAGCTTCAAGAACACAGCGCCTGCACCGATGCCGGGTATGGAGGGATGGCAAGCGGCGGCGTTCCGGATATCCGGGGACAAAGCATACTTCTCGGGATGCGGGTTCTATGGTGCACAAGACACCCTCTGTGACGACGCTGGCCGCCATTACTTCAAGGAATGCTATATAGAGGGTTCCATAGATTTCATCTTTGGGAATGGCAGGTCCATCTACAAGGATTGCGAGCTGCACTCGATAGCAACAAGGTTCGGGTCCATAGCTGCTCAGGACAGGAAAAGCCCAAATGAGAAGACAGGCTTCGCATTTGTAAGGTGCTGGGTGACGGGTACAGGGCCGCTATATGTGGGGCGAGCAATGGGCCAGTATTCAAGGATTGTGTACGCCTATACATATTTCGACGACATAGTTGCGCATGGCGGGTGGGATGATTGGAGCCATGCGGACAACAAGAACAAGACTGTATTCTTTGGAATGTACAAGTGCTGGGGCCCAGGAGCTGCAGCGTTACGTGGGGCGTCATGGGCCCGAGACCTAGATTTCGAATCGGCCCACCCATTTCTGGTCCAGAGTTTCGTCAACGGTAGACATTGGATCGCACCATATGATGCTTAG 1077 0.5181 MPPLWIWLQVLLVFTSLFHALSVTSITYRDCTTQSMPSTNSSKQNRRWVGPIGHRVITVDVNGGGHFRSVQAAVNAVPENNRVNVLIQIGAGYYIEKVVVPVTKAYITFEGAGRDVTVIEWHDRASDPGPNGQQLRTYRTASVTVFANFFSARNISFKNTAPAPMPGMEGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSIYKDCELHSIATRFGSIAAQDRKSPNEKTGFAFVRCWVTGTGPLYVGRAMGQYSRIVYAYTYFDDIVAHGGWDDWSHADNKNKTVFFGMYKCWGPGAAALRGASWARDLDFESAHPFLVQSFVNGRHWIAPYDA 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0194 358 Pfam Pectinesterase 57 349 IPR000070 GO:0030599|GO:0042545
Glsi09g0194 358 Gene3D - 53 357 IPR012334 -
Glsi09g0194 358 FunFam Pectinesterase 52 355 - -
Glsi09g0194 358 SUPERFAMILY Pectin lyase-like 54 356 IPR011050 -
Glsi09g0194 358 ProSitePatterns Pectinesterase signature 2. 211 220 IPR033131 -
Glsi09g0194 358 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 52 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0194 Glsi-ChrGlsi09 1464362 1466041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0194 11 358 Carbohydrate Esterase AT5G47500 73.563 0.0 540