Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0189 ATGGAGAGGCACAAATGCAAGCTTTGCTCGAGGACATTCGCCAATGGCAGATCATTGGGTGGCCACATGAAGGCTCACTTGGCCACCCTGCCCCTTCCTCCGAAGCCTGAACCACTCCCGGAACGCACTCACTCGCCTTCATTCTCATATTCCTTTTCGTCAGAGGAAGAAACAGCAGCAGCACTAGCTTACAGAGAATCAGACGAAAAGGCTTTGATTTATGGGTTGAGAGAGAATCCCAAGAAAAGTATCAGGCTTGCAGATCCTGAGTTTTCTTTTGCAGTTGATACTGGCTCTGTCGTCCAAGACAGAGAGAGCGAGACCGACTCAAAGAACCCAACTCGCCATCGATCCAAGCGAATCCGAAAATCCAGCGTTGGAGGAAGCCAGGGCCCGAACCAGAACCAGAAATTGGTACCGAAGAAGCCCAAACCGAGTTTCACGGAGTCACCGACCGAGCCAGAACCGGTGAGCTCCGTTTCTGATACTTGTACCGAAGAAGATGTTGCCATGTGCCTCATGATGCTCTCAAGGGACGGATGGATGAGAAATGTTGTAAAAGAAGATCGGGAGCAAGAAGAAAAAGGGCCGAGATCAGTGGAAAAATCAAAGGGATTCGAAGAGATCAAGTTAAAGGGAGTTCGCGGGAAGCACCAGTGTGACAGCTGTAGGAAAACGTTTCGATCTTCCCGAGCATTGGGCAGTCACAAAAATATCTGCTTTCGCGATGAAGCAGAAGCGAGAAGTGCAGGTAATAATGATAAAATTTTTGAATGCCCATTTTGTTACAAGGTATTTGGGTCAGGACAAGCACTTGGTGGCCACAAGAGATCTCACCTTGTAGCATCTTCATCGTCAACTGTTAATGACTCTGGTAGATTGAAAGAGAGCTTTATAGATCTCAACTTGCCTGCTCCAGCAGAAGAAGACGAACTGAGTGTGGTTTCTGATGCATAA 957 0.4786 MERHKCKLCSRTFANGRSLGGHMKAHLATLPLPPKPEPLPERTHSPSFSYSFSSEEETAAALAYRESDEKALIYGLRENPKKSIRLADPEFSFAVDTGSVVQDRESETDSKNPTRHRSKRIRKSSVGGSQGPNQNQKLVPKKPKPSFTESPTEPEPVSSVSDTCTEEDVAMCLMMLSRDGWMRNVVKEDREQEEKGPRSVEKSKGFEEIKLKGVRGKHQCDSCRKTFRSSRALGSHKNICFRDEAEARSAGNNDKIFECPFCYKVFGSGQALGGHKRSHLVASSSSTVNDSGRLKESFIDLNLPAPAEEDELSVVSDA 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0189 318 Gene3D Classic Zinc Finger 215 279 - -
Glsi09g0189 318 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Glsi09g0189 318 MobiDBLite consensus disorder prediction 33 52 - -
Glsi09g0189 318 Pfam C2H2-type zinc finger 218 243 - -
Glsi09g0189 318 Pfam C2H2-type zinc finger 257 279 - -
Glsi09g0189 318 Pfam C2H2-type zinc finger 3 28 - -
Glsi09g0189 318 SMART c2h2final6 4 26 IPR013087 -
Glsi09g0189 318 SMART c2h2final6 257 279 IPR013087 -
Glsi09g0189 318 SMART c2h2final6 218 238 IPR013087 -
Glsi09g0189 318 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Glsi09g0189 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 257 279 IPR013087 -
Glsi09g0189 318 ProSitePatterns Zinc finger C2H2 type domain signature. 259 279 IPR013087 -
Glsi09g0189 318 SUPERFAMILY beta-beta-alpha zinc fingers 218 279 IPR036236 -
Glsi09g0189 318 MobiDBLite consensus disorder prediction 124 141 - -
Glsi09g0189 318 MobiDBLite consensus disorder prediction 97 163 - -
Glsi09g0189 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Glsi09g0189 318 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 318 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0189 Glsi-ChrGlsi09 1435638 1436594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0189 1 315 C2H2 Transcription Factor Family AT3G60580 37.901 4.55e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi09g0189 zf-C2H2_6 0.00053 CL0361