Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0188 ATGTTTACGTTTTTCGGTTATTACTTGTTATTTGTCTTCTCCTTCTTCGCCCTCTTTCTTTCCCGCCCTTGCTTTACCGCCAGGATCATACCCGAAACGGTAACTGTAATAACTAACAAAAGCCATAACGCCACGTGGCACGACTTCTCGAGATTCTTACATGCCGAGAGAGGTAGCCAAGTCAGCGGCATGTCGAAGCTCAAGAAGTACTTCCACCACTTCGGTTACCTGTCTATATCCGATACGACGCCGAACTTTACCGATAACTTTGATAGCCAGTTCGAGTCTGCCGTTATCCTTTACCAGAAGAGGCTGGGATTGTCTGAAACCGGAATGCTCGACTCCGATACCATATCGACGATTATGGCGCCGAGATGCGGCGTGAGCGATGATTCGTCACATAGAATACATTCGACCCGTCACTTTGCTTACTTTGACGGTAAGCCAAGGTGGGTTCGCGGTTCTCCGATGAATCTCTCGTATGCCTTCTCACCAGACAACATGATTGACCGTCTAAGTATATCGGAAATTCGAACGGCTTTTGAACGTGCCTTTTCGCGGTGGGCATCGGTGATTCCGGTGAATTTCGTGGAGACAAGCCAATACGAATCGGCCGACGTTAAGATTGGGTTTTATCGTGGGGATCATGGGGACGGAGAACCTTTTGATGGTGTTTTAGGGGTTTTAGCCCACGCCTTCTCCCCCGAGAATGGGAGGTTCCACCTGGATGCAGATGAAACTTGGTCCGTCGATTTTGACCGTGATGAGTCAAACGTGGCTGTTGATTTGGAATCTGTGGCTACCCATGAGATTGGGCATGTACTTGGGTTGGCTCACACTTCGGTGAAGGAAGCGGTGATGTATCCGAGCCTGAGTCCGAGGACCAAAAAGCTAGACTTGAAGATTGATGACGTGGAGGGAGTTCAAGCTTTGTATGGGTCAAACCCCAACTTCACTTTTAGTTCTTTGTGGCAGTCGGAAAATTCCTCCAACTTTGCGGTCGGGTCCGAAAGTGGTTTGTCCAAATGGACACTGTTTTTGGCTCTGGCACTGTTAATATTATTTTTACGCGCATGGATTAGAAGAATTCACAAGAAAAGTTTCTTGCTCGTCCTCGACTCCTCCATGGCTTCAACCTGCAGCAGAATCGCGAAAAGAACATCCCTTTCGTCCATCAAAACCGCCATTAAATCCAATGTTCGCAACCCTTCTTCCTGTATATCACCCACCATCTCCGCTACTCCTACTAAATCTTCCTCTACTCCCCTCCTTCGATCCTTCTTAACTAGGACTGCACCGGAACTGGGCTGCCTGCAGTCAATGTTGCCACTCCACAGTGCGGTTGCAGTGGCCAGAATGACGTCGTGCCTGAGCACAACGTCCAGGAGCTGCCGAGCGCTTTCTCAGGGTACTCTCTGCTGCACCTCTCCCGACCTGTTGGTTATACTGTTGACTTGGTGGTCACTTGAAAAAGGGGCACATAGTTTATTGAGAATTTGCGGGACCTACCAATTATGGCCTACTGCTTCATTATCAAATGGAATTGATGGGACAGTTTGGTCTGTCAGTTCCAAGACCGCCTACATTTTACTTGCTTTCCTAAGTCATGATGTTGACTACCTGTTCTACTCATTCCTCCAGCTGTTGTATTGTAAGAGGTTTATCCATGTTGGGTATTCTTTTGATCTTTATGCAAAGAGATCTTGGTCAACTAGAGTATACACAGAAAAAATGATGACGGGGGAGATGATAAATAGGGGAATGATAGAAGATGTAGTAATTATAGGAGGATTGATAGGAGTGCAATTTGTGTACGCAGGGAACGCTGTGCTTCTGAGTTATCTTATGTCTTTGGGCCTCAGCTCTCTTACCATTGTCATTTATACTTCATTGGCTACATTCCTCATTCTCTTCCCCTTTGCCTTTTATTTTGAAAGGATTAAATGGCCCAAGAAATTCAGTTTGAAGTTAATCATACAGCTATTGTTGCTTGCATTTGGAGGGGTAACTTTGTTCCAGTCCTTATTCCTCAGAGGAATCAATCTAACTTCGCCAGCAATGGGAACTGCTATGCCAAACCTTGCCCCGGGTCTTATCTTCATCATCGCATGGACTTTTAAGTTAGAGAAAGTGGAGTTAAGTTGCACGTATAGTAAAGTGAAAATTATAGGGACATTGCTGTGCGTCATAGGCGCTCTCACAATGAGCATAATGCAAAGCATTTCCGCTCCATCCACGGCCAAAGAAGCTCAAGTTGAATTGTTATTGTCACCATCAGATTCTATGTTTGACAAGAACAAAATTATCGGTTGCCTATATCTCATGGCTGCAGTCTTCATTTTATCAAGCAACATTGTCCTGCAGGCTTTTACTTTAGGAGATTTTCCTGCACCAATGTCTGTGTGCGCAATAACATCCTTGTTTGGAGCGCTCATGACTGCAATAACTCAGTTGCTTGAAGATCACAAACTGAATTCTGGTTGGCCACTTGTGAATTTTGGGGACCTGTTATGCTATTCTGTGTTGTCAGGTGTGGTAAGTGCAATATGTCTAAGCTTTAATGGGTGGGCACTCAAGAAGAGAGGGCCAGTGTTGGTGTCCATGTTTAGCCCCGTTGGTACTGTCTGCTCCGTCATTTTCTCTGTTGTTACACTCGGAGATACCATGAACTTTGGCAGCCTTGCGGGTATGCTGCTCATGTTCACGGGGCTCTACTTTGTGCTTTGGGCTAAAGGGAAAGAAGGTTACGCAGATGGACATAGCTCAGAGAGTGAGTTTGATGCAGAGAAGCCTCTCCTAAGTTGA 2805 0.4592 MFTFFGYYLLFVFSFFALFLSRPCFTARIIPETVTVITNKSHNATWHDFSRFLHAERGSQVSGMSKLKKYFHHFGYLSISDTTPNFTDNFDSQFESAVILYQKRLGLSETGMLDSDTISTIMAPRCGVSDDSSHRIHSTRHFAYFDGKPRWVRGSPMNLSYAFSPDNMIDRLSISEIRTAFERAFSRWASVIPVNFVETSQYESADVKIGFYRGDHGDGEPFDGVLGVLAHAFSPENGRFHLDADETWSVDFDRDESNVAVDLESVATHEIGHVLGLAHTSVKEAVMYPSLSPRTKKLDLKIDDVEGVQALYGSNPNFTFSSLWQSENSSNFAVGSESGLSKWTLFLALALLILFLRAWIRRIHKKSFLLVLDSSMASTCSRIAKRTSLSSIKTAIKSNVRNPSSCISPTISATPTKSSSTPLLRSFLTRTAPELGCLQSMLPLHSAVAVARMTSCLSTTSRSCRALSQGTLCCTSPDLLVILLTWWSLEKGAHSLLRICGTYQLWPTASLSNGIDGTVWSVSSKTAYILLAFLSHDVDYLFYSFLQLLYCKRFIHVGYSFDLYAKRSWSTRVYTEKMMTGEMINRGMIEDVVIIGGLIGVQFVYAGNAVLLSYLMSLGLSSLTIVIYTSLATFLILFPFAFYFERIKWPKKFSLKLIIQLLLLAFGGVTLFQSLFLRGINLTSPAMGTAMPNLAPGLIFIIAWTFKLEKVELSCTYSKVKIIGTLLCVIGALTMSIMQSISAPSTAKEAQVELLLSPSDSMFDKNKIIGCLYLMAAVFILSSNIVLQAFTLGDFPAPMSVCAITSLFGALMTAITQLLEDHKLNSGWPLVNFGDLLCYSVLSGVVSAICLSFNGWALKKRGPVLVSMFSPVGTVCSVIFSVVTLGDTMNFGSLAGMLLMFTGLYFVLWAKGKEGYADGHSSESEFDAEKPLLS 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0188 934 CDD ZnMc_MMP 158 313 IPR033739 GO:0008237|GO:0008270
Glsi09g0188 934 Gene3D Collagenase (Catalytic Domain) 53 319 IPR024079 GO:0008237
Glsi09g0188 934 SMART col_5 147 314 IPR006026 GO:0006508|GO:0008237|GO:0008270
Glsi09g0188 934 Pfam Matrixin 157 313 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Glsi09g0188 934 Pfam Putative peptidoglycan binding domain 64 119 IPR002477 -
Glsi09g0188 934 SUPERFAMILY PGBD-like 54 130 IPR036365 -
Glsi09g0188 934 Pfam EamA-like transporter family 769 908 IPR000620 GO:0016020
Glsi09g0188 934 Pfam EamA-like transporter family 599 736 IPR000620 GO:0016020
Glsi09g0188 934 SUPERFAMILY Multidrug resistance efflux transporter EmrE 832 912 - -
Glsi09g0188 934 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 156 316 - -
Glsi09g0188 934 PRINTS Matrixin signature 205 233 IPR021190 GO:0004222|GO:0006508|GO:0008270
Glsi09g0188 934 PRINTS Matrixin signature 181 196 IPR021190 GO:0004222|GO:0006508|GO:0008270
Glsi09g0188 934 PRINTS Matrixin signature 266 291 IPR021190 GO:0004222|GO:0006508|GO:0008270
Glsi09g0188 934 PRINTS Matrixin signature 121 134 IPR021190 GO:0004222|GO:0006508|GO:0008270
Glsi09g0188 934 PRINTS Matrixin signature 300 313 IPR021190 GO:0004222|GO:0006508|GO:0008270
Glsi09g0188 934 PANTHER MATRIX METALLOPROTEINASE 45 329 - -
Glsi09g0188 934 FunFam Metalloendoproteinase 1 54 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0188 Glsi-ChrGlsi09 1422367 1431031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0188 582 923 Nodulin-like Gene Family AT5G47470 59.184 2.03e-134 406