Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0160 ATGGGGCGAGGGCTGGAAATGGATCTTTTGAGAATCTTGGGCAGCGGAATGAATACATTTTCACATGTTCCTCCAGGCTTTCGGTTCCATCCCACTGATGAGGAACTTGTTGATTACTACCTTAGAAAGAAGGTAGCTTCAAAAAGGATTGATCTAGATGTCATCAAAGATGTCGATCTCTACAGAATTGAGCCATGGGATCTCCAAGGAACGGAAGAACAAACTGAATGGTATTTCTTTAGCCATAAAGATAAGAAGTACCCGACTGGAACTCGGACGAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACAGGAAGAGATAAGGCAATCTACTCTAGGCATTGCCTAATTGGGATGAGGAAGACTCTAGTGTTCTACAAAGGACGAGCCCCAAATGGACAGAAGTCAGATTGGATCATGCATGAGTACCGCCTAGAAACCAATGAAAGTGGAACTCCTCATCAGGAAGAAGGATGGGTAGTGTGTAGAGTCTTCAAGAAGCGAATGCCAACAATGCGGAAAGTGGGAGAATATGAATCACCCTGCTGGTACGATGAGCAAGTCTCCTTGATGCAAGAGCTTGAATCATACCACCAACACTACCCCTGCAGGCAGGAGTTGGAATTGCAATACAACACGTCCCATGATGCTTTCCTCCAACTTCCACAACTAGAAAGCCCCAAAGTTGATCAATCAGCTACCATCCCTTATGGTTACGATGGCACTCAACAGAATCCGCATTCACTTTATGCTACCAATGACCAAGCTGTGGATCAAGTTACTGACTGGCGAGTACTTGACAAATTCGTTGCTTCTCAGCTCAGTCAAGACCCAGATTATGCTTCCAAGGAAACCAGTTATTCCAATATTGCAGCTGTGGCTGAACAAGTTACTGTGCTAGCAAACGAACCCAAAAGGACGGAATTGGCCCAGCAATATTCTGCGAGTTCCTGTACATAA 963 0.4496 MGRGLEMDLLRILGSGMNTFSHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDVIKDVDLYRIEPWDLQGTEEQTEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSRHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNESGTPHQEEGWVVCRVFKKRMPTMRKVGEYESPCWYDEQVSLMQELESYHQHYPCRQELELQYNTSHDAFLQLPQLESPKVDQSATIPYGYDGTQQNPHSLYATNDQAVDQVTDWRVLDKFVASQLSQDPDYASKETSYSNIAAVAEQVTVLANEPKRTELAQQYSASSCT 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0160 320 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 247 - -
Glsi09g0160 320 SUPERFAMILY NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
Glsi09g0160 320 Pfam No apical meristem (NAM) protein 24 146 IPR003441 GO:0003677|GO:0006355
Glsi09g0160 320 FunFam Nac domain-containing protein 86 32 171 - -
Glsi09g0160 320 ProSiteProfiles NAC domain profile. 23 168 IPR003441 GO:0003677|GO:0006355
Glsi09g0160 320 Gene3D NAC domain 32 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0160 Glsi-ChrGlsi09 1209355 1210720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0160 17 320 NAC Transcription Factor Family AT1G12260 56.980 1.04e-126 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi09g0160 NAM 2.6e-37 No_clan