Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0153 ATGGTTATCAACCTCCCAAACACAGATTGCTTGGACGAAGCTCACTGCTCCTTACTCAAAAGGGGCTCAGATTTTCGTGATATCTACAACCACAAGAGAGGAAGCAAGAGACGGAGAGAGAGAAGGAGCCCGCCAACTCAAGCAACAAAACACTCTCTCTTTGCGGAGAATATGGCGACACAGTATTTCAGAGTGACAGCGGCTTCAGCTTCCTCACTCGGCAATTTCAATGGCTCTCAGAGCAGGCCAACCCCTCTCTCTCCAGTTCGCTTCATGGCTGTTCGCCCTCGACCCTCTCATTCTTCTACTTCATCTTCCCTTTCCCAATTCTTTGGAAGTTCGCGAATTTGCTCCAAATCTTCAAACCTCTCCAATTTACGGCATCGGAGCAGAAGAAACTTATCTGTTTTTGCCATGGCCGCTGAAGGTTCAAGTCGAGCCATTCCATTGAATGATTATCGCAATATTGGCATCATGGCTCACATAGATGCTGGAAAGACAACTACAACCGAAAGGGTTCTCTACTATACTGGAAGAAACTACAAAATAGGAGAAGTACACGAGGGAACAGCAACAATGGACTGGATGGAACAAGAGCAAGAAAGAGGGATTACCATAACTTCTGCTGCAACCACTACATTTTGGAATAAGCACAGGATCAACATAATTGATACTCCCGGTCATGTTGACTTCACCCTGGAAGTGGAGCGCGCTCTTAGGGTGTTGGATGGAGCTATATGCTTGTTTGACAGTGTTGCTGGTGTGGAACCTCAATCAGAAACCGTGTGGAGACAAGCTGATAAATATGGGGTCCCGCGGATTTGTTTTGTAAATAAGATGGACCGTCTTGGGGCAAACTTTTTCCGAACAAGAGATATGATAGTAACAAATTTGGGTGCTAAACCACTTGTAATTCAGGTACCAATTGGTTCAGAAGATAACTTTAAGGGAGTTGTTGATCTTGTGAGAATGAAAGCTATAATTTGGACAGGGGAAGAGTTGGGTGCCAAGTTTGCTTATGAAGATATTCCAGTAGATCTTCAAGAACTTGCTCAGGATTACCGATCCCAGATGATAGAAACCATTGTTGAGTTGGACGATGAAGCAATGGAGAGCTACCTAGAAGGAATTGAACCAGATGAAGAAACCATAAAAAATTTAATTAGGAAGGGAACCATATCAGGAAAGTTTGTGCCAGTACTGTGTGGCTCAGCTTTCAAAAACAAGGGGGTCCAACCATTGCTCGATGCTGTTGTGGATTATCTCCCTTCACCACTTGACTTGCCACCAATGAAGGGAACTGACCCTGAAAACCCAGAAGTGACAATAGCAAGGAAAGCAAGTGATGATGAACCATTTTCTGGACTAGCTTTTAAGATCATGAGCGATCCATTTGTAGGTTCCCTTACATTTGTCAGGGTGTATGCTGGAAAGCTAAGTGCAGGATCTTATGTACTCAATGCAAACAAGGGGAAAAAGGAGAGAATCGGTAGACTTCTAGAAATGCATGCAAATAGCAGGGAGGATGTTAAAGTAGCTTTAGCAGGTGATATTGTTGCTCTTGCAGGTTTGAAAGATACTATTACAGGCGAAACATTGTGTGACCCTGGTAGTCCTATTGTGCTTGAGCGTATGGACTTTCCTGATCCTGTGATTAAGGTTGCAATTGAACCCAAAACTAAAGCTGATGTTGACAAGATGGCAACTGGTTTAATAAAGCTTGCCCAGGAAGATCCTTCTTTCCACTTCTCCAGGGATGAAGAGATAAACCAGACAGTGATTGAAGGAATGGGAGAATTGCATCTTGAAATCATCGTTGACCGACTGAAGAGAGAATTTAAGGTGGAAGCTAACGTTGGTGCACCCCAAGTAAACTACAGGGAAAGCATTTCCAAAATCTCAGAAGTGAAGTATGTGCACAAGAAACAGTCAGGCGGACAAGGTCAGTTTGCAGATATCACTGTACGGTTTGAACCCATGGAGCCAGGTAGTGGATATGAGTTCAAGAGTGAGATCAAAGGAGGTGCTGTACCAAGAGAATACATTCCTGGCGTGATGAAAGGATTGGAAGAGTGTATGAGCAATGGCGTGCTTGCTGGATTTCCAGTTGTTGATGTACGTGCAGTACTTGTAGATGGTTCTTACCATGATGTAGATTCAAGTGTCCTGGCATTCCAGTTGGCTGCAAGAGGAGCTTTTCGGGAGGGAATGAGAAAAGCTGGACCAAAGATGCTTGAACCTGTGATGAAAGTTGAAGTTGTTACTCCTGAAGATCATCTAGGAGATGTAATTGGCGATCTCAACTCAAGAAGAGGCCAGATCAACAGCTTTGGTGACAAACCCGGTGGCCTTAAGGTGGTTGATTCCCTGGTTCCTCTTGCTGAAATGTTTCAGTATGTCAGTACGCTTAGGGGGATGACGAAGGGCCGTGCATCCTACACAATGCAATTAGCGCAGTTTGATGTTGTGCCTCAGCACATTCAAAATCAACTCGCCTCAAAGGAGCAAGAAGTTGCTGCTTAA 2523 0.4431 MVINLPNTDCLDEAHCSLLKRGSDFRDIYNHKRGSKRRRERRSPPTQATKHSLFAENMATQYFRVTAASASSLGNFNGSQSRPTPLSPVRFMAVRPRPSHSSTSSSLSQFFGSSRICSKSSNLSNLRHRSRRNLSVFAMAAEGSSRAIPLNDYRNIGIMAHIDAGKTTTTERVLYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVIQVPIGSEDNFKGVVDLVRMKAIIWTGEELGAKFAYEDIPVDLQELAQDYRSQMIETIVELDDEAMESYLEGIEPDEETIKNLIRKGTISGKFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDLPPMKGTDPENPEVTIARKASDDEPFSGLAFKIMSDPFVGSLTFVRVYAGKLSAGSYVLNANKGKKERIGRLLEMHANSREDVKVALAGDIVALAGLKDTITGETLCDPGSPIVLERMDFPDPVIKVAIEPKTKADVDKMATGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKISEVKYVHKKQSGGQGQFADITVRFEPMEPGSGYEFKSEIKGGAVPREYIPGVMKGLEECMSNGVLAGFPVVDVRAVLVDGSYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPVMKVEVVTPEDHLGDVIGDLNSRRGQINSFGDKPGGLKVVDSLVPLAEMFQYVSTLRGMTKGRASYTMQLAQFDVVPQHIQNQLASKEQEVAA 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0153 840 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 194 209 IPR031157 -
Glsi09g0153 840 Pfam Elongation factor Tu GTP binding domain 152 424 IPR000795 GO:0003924|GO:0005525
Glsi09g0153 840 CDD EFG_mtEFG1_IV 626 741 IPR005517 GO:0005525
Glsi09g0153 840 FunFam Elongation factor G 551 627 - -
Glsi09g0153 840 Gene3D Translation factors 436 550 - -
Glsi09g0153 840 CDD EFG_mtEFG_C 746 824 IPR035649 -
Glsi09g0153 840 PRINTS GTP-binding elongation factor signature 237 248 IPR000795 GO:0003924|GO:0005525
Glsi09g0153 840 PRINTS GTP-binding elongation factor signature 155 168 IPR000795 GO:0003924|GO:0005525
Glsi09g0153 840 PRINTS GTP-binding elongation factor signature 201 209 IPR000795 GO:0003924|GO:0005525
Glsi09g0153 840 PRINTS GTP-binding elongation factor signature 273 282 IPR000795 GO:0003924|GO:0005525
Glsi09g0153 840 PRINTS GTP-binding elongation factor signature 221 231 IPR000795 GO:0003924|GO:0005525
Glsi09g0153 840 CDD EFG_III 548 623 IPR009022 -
Glsi09g0153 840 Pfam Elongation factor Tu domain 2 467 534 IPR004161 GO:0005525
Glsi09g0153 840 Gene3D Elongation Factor G (Translational Gtpase), domain 3 551 627 - -
Glsi09g0153 840 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 151 426 IPR000795 GO:0003924|GO:0005525
Glsi09g0153 840 SUPERFAMILY Translation proteins 407 547 IPR009000 -
Glsi09g0153 840 SMART EFG_IV_2 623 741 IPR005517 GO:0005525
Glsi09g0153 840 FunFam Elongation factor G 144 435 - -
Glsi09g0153 840 Gene3D - 144 435 IPR027417 -
Glsi09g0153 840 Hamap Elongation factor G, chloroplastic. 143 840 IPR030848 GO:0003746|GO:0006414|GO:0009507
Glsi09g0153 840 SUPERFAMILY EF-G C-terminal domain-like 746 835 IPR035647 -
Glsi09g0153 840 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 424 IPR027417 -
Glsi09g0153 840 NCBIfam elongation factor G 145 835 IPR004540 GO:0003746|GO:0005525|GO:0006414
Glsi09g0153 840 MobiDBLite consensus disorder prediction 29 53 - -
Glsi09g0153 840 Pfam Elongation factor G C-terminus 744 830 IPR000640 -
Glsi09g0153 840 FunFam Elongation factor G 628 758 - -
Glsi09g0153 840 Pfam Elongation factor G, domain IV 622 740 IPR005517 GO:0005525
Glsi09g0153 840 SUPERFAMILY EF-G C-terminal domain-like 547 624 IPR035647 -
Glsi09g0153 840 Hamap Elongation factor G [fusA]. 149 835 IPR004540 GO:0003746|GO:0005525|GO:0006414
Glsi09g0153 840 CDD EF-G 155 425 - -
Glsi09g0153 840 FunFam Elongation factor G 435 550 - -
Glsi09g0153 840 FunFam Elongation factor G 747 818 - -
Glsi09g0153 840 Gene3D - 628 831 IPR014721 -
Glsi09g0153 840 Gene3D - 747 818 - -
Glsi09g0153 840 NCBIfam small GTP-binding protein domain 153 323 IPR005225 GO:0005525
Glsi09g0153 840 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 125 836 - -
Glsi09g0153 840 SMART EFG_C_a 743 831 IPR000640 -
Glsi09g0153 840 SUPERFAMILY Ribosomal protein S5 domain 2-like 622 742 IPR020568 -
Glsi09g0153 840 CDD EFG_mtEFG_II 453 535 - -
Glsi09g0153 840 Pfam Elongation Factor G, domain III 547 620 IPR041095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0153 Glsi-ChrGlsi09 1171334 1176891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0153 151 811 Eukaryotic Initiation Factors Gene Family AT1G56070 25.366 2.83e-41 161