Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0147 ATGGGGAGGCAACCCTGCTGTGACAAACTTGAAGTGAAGAAAGGCCCATGGACGGCTGAGGAAGACAAGAAGCTCATCAACTTTATTCTCACCAATGGTCGGTACTGTTGGCGAGCTGTTCCCAAGCTCGCTGGGCTTAGGCGTTGTGGCAAGAGTTGCCGTCTTCGTTGGACTAATTATCTTCGCCCTGACCTCAAGAGAGGCCTTCTCACTCAAGAAGAAGAGCAGCTGGTTATCCATCTCCATTCTCGTCTTGGCAACAGGTGGTCCATGATTGCCGCCAGATTACCAGGAAGGACGGACAATGAGATTAAAAATCATTGGAACACCCACATCAAGAAAAAGCTCCTAAAGATGGGTATCGATCCCGTCACTCATGAACCTCTCAACAAACAAGCTGCTTCCCCCGCAGAGCATTTCCCACCATCTGGCAACGAGCGTCATCAGGTTAAGGAGGATGAATCCCTTTCGCTAGATAGCATTTGGAGCGACGACTCTCTAATCAACAGCTTGTGGAAGGAAGTGGACGCATCTTGGGAGGAGGACAACAGTGCGTGGTTACTGGACTCTCAGGACCTTGGTTTTGATGATTTTGGTTTTAATTTTTTCAACCAGGTGGAGTCTAATGCAGTTCAAACTCCAGGGATGGAGGACAAGATCTGTCCTTGA 669 0.4888 MGRQPCCDKLEVKKGPWTAEEDKKLINFILTNGRYCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQEEEQLVIHLHSRLGNRWSMIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKQAASPAEHFPPSGNERHQVKEDESLSLDSIWSDDSLINSLWKEVDASWEEDNSAWLLDSQDLGFDDFGFNFFNQVESNAVQTPGMEDKICP 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0147 222 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi09g0147 222 CDD SANT 16 61 IPR001005 -
Glsi09g0147 222 MobiDBLite consensus disorder prediction 131 151 - -
Glsi09g0147 222 Gene3D - 11 67 - -
Glsi09g0147 222 Gene3D - 71 139 - -
Glsi09g0147 222 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Glsi09g0147 222 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi09g0147 222 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi09g0147 222 FunFam transcription factor MYB80 69 129 - -
Glsi09g0147 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi09g0147 222 PANTHER F14D16.11-RELATED 1 147 - -
Glsi09g0147 222 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Glsi09g0147 222 CDD SANT 71 112 IPR001005 -
Glsi09g0147 222 SMART sant 13 63 IPR001005 -
Glsi09g0147 222 SMART sant 66 114 IPR001005 -
Glsi09g0147 222 FunFam MYB transcription factor 11 67 - -
Glsi09g0147 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0147 Glsi-ChrGlsi09 1147381 1148539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0147 1 183 MYB Transcription Factor Family AT4G22680 58.447 4.42e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi09g0147 Myb_DNA-binding 2.4e-13 CL0123