Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0116 ATGCCACATACCTCTGCACCGATAACCAATCTAGCTTTGGCCGCTACAGATTTTAATGAAAGTGATATCATTCATCCTAGTGAATTCAATAAGAGCAAGATCATGCATAGAGATATTGAAAGACAAAGAAGGCAAGAAATGGCCTCTCTCCACGCTTCTCTGCGATCGCTGCTCGCTGTTGGATACATGAAGGGAAAGCGTTCTATATCAGACCATATGCACGAGGCGGTGAATTATATCAAACAACTTCAGAACAAGACCGAGCAGCTAATTAACAAGAGAGATAGGCTGCTAAAACTATGCAACCCTGTCCCTACATCTTCCCACGAAGGACTAGGATATTCGCGGAGAACCACGCAGGATGTTGTGACAGTGAGGCCCTGCTTGGCAGTAATAGTGGACTTCTATAGTAGGACCCTGCCCTCTAATTCCAGTTCTATTTCAGGTACGGGAGTACAGTCGCCAGAAGGTCATGGATTATCTGACCCAATACTTGTTATTTCACTTTCCTCAGAAGAGAATCAAACTACTCACTACTCACTATGGCTTCAGGATGATCTTCTCCTTTGGGGGCTCTCAGAATACTGCCCAACATATCCTAACCTTTTCCTTGTTCACCAATCCCCTCTGCAGAATACTCTGGTACTAGCCGTTGCTCAGAATCTCAATGGTGTCTCCAATGTGCATCAGAATGAAATCCGGCACACATTTTGCCGTCACCCATTTGCCTTGATAAAAAAGTCGCAGCCCCGGCACCATATTGTGGAGCAGCAAAGTGAACTTACATCCGTGTGGGCTTCAACTCTAAAAGCCAGCTTTGGCTGGGGGCAAATGGAGTAG 840 0.4571 MPHTSAPITNLALAATDFNESDIIHPSEFNKSKIMHRDIERQRRQEMASLHASLRSLLAVGYMKGKRSISDHMHEAVNYIKQLQNKTEQLINKRDRLLKLCNPVPTSSHEGLGYSRRTTQDVVTVRPCLAVIVDFYSRTLPSNSSSISGTGVQSPEGHGLSDPILVISLSSEENQTTHYSLWLQDDLLLWGLSEYCPTYPNLFLVHQSPLQNTLVLAVAQNLNGVSNVHQNEIRHTFCRHPFALIKKSQPRHHIVEQQSELTSVWASTLKASFGWGQME 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0116 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 31 83 IPR011598 GO:0046983
Glsi09g0116 279 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 30 154 - -
Glsi09g0116 279 Gene3D - 25 105 IPR036638 GO:0046983
Glsi09g0116 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 32 104 IPR036638 GO:0046983
Glsi09g0116 279 Pfam Helix-loop-helix DNA-binding domain 33 84 IPR011598 GO:0046983
Glsi09g0116 279 Coils Coil 73 100 - -
Glsi09g0116 279 CDD bHLH_AtORG2_like 32 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0116 Glsi-ChrGlsi09 894653 897290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0116 33 130 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 50.000 4.14e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi09g0116 HLH 2.2e-08 No_clan