Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0112 ATGTCATCGCAATCCTTCCATCCAAGAATCATAAGAATGGCTTCCATCCTTCACTTTGGTAGCTTAAGTATGTTCTTGTTGATTTCATGGATGTTGGGGAAACCAACGGCAGCTGCGGGAGTGTTCCGACCCAGCCGATGGGGTCTTGCCCATGCCACATTTTATGGTGATGAGACTGCTTCTGCCACCATGGGAGGAGCATGTGGGTACGGGAATTTGCTTATAAATGGTTACGGCACAGACACGGTGGCTTTGAGCTCCGCATTGTTCAACAATGGGTATGCCTGCGGGACTTGTTACCAGATCAAATGCTACCAATCCAGTGCGTGCCATAAGAATGTGCTGTTTACCACAGTGACTGCCACCAACCTTTGCCCTCCCAACTGGGCTCAGCCCTCTGACAATGGTGGGTGGTGCAACCCTCCACGTGTGCACTTTGACATGTCCAAGCCTGCCTTCATGAAAATAGCCGAGTGGAAGGCTGGCATAGTCCCCGTTGTGTACCGCAGAGTGCCTTGCTGGAGGAGTGGGGGGCTTCGATTCTCTTTCCAAGGAAACGGGTACTGGCTGTTGGTTTACGTGATGAACGTGGGAGGTGGGGGAGATATAGGCAGCATGTGGGTGAAAGGAAGCAGAACGGGATGGATTAGCATGAGCCACAACTGGGGAGCTTCGTACCAGGCATTTGCAACTCTGGGGGGACAAGCTCTTTCTTTCAGGATAACTTCACACACGACCGGGCAGACTATTATAGCCTGGAATGTTGCTCCTCCCAATTGGAGCGTGGGACTAACTTATTCCGCCAATACCAACTTCCGCTGA 822 0.517 MSSQSFHPRIIRMASILHFGSLSMFLLISWMLGKPTAAAGVFRPSRWGLAHATFYGDETASATMGGACGYGNLLINGYGTDTVALSSALFNNGYACGTCYQIKCYQSSACHKNVLFTTVTATNLCPPNWAQPSDNGGWCNPPRVHFDMSKPAFMKIAEWKAGIVPVVYRRVPCWRSGGLRFSFQGNGYWLLVYVMNVGGGGDIGSMWVKGSRTGWISMSHNWGASYQAFATLGGQALSFRITSHTTGQTIIAWNVAPPNWSVGLTYSANTNFR 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0112 273 SUPERFAMILY PHL pollen allergen 175 267 IPR036749 -
Glsi09g0112 273 Pfam Lytic transglycolase 82 168 IPR009009 -
Glsi09g0112 273 Gene3D - 179 273 IPR036749 -
Glsi09g0112 273 PRINTS Expansin signature 136 153 IPR002963 GO:0009664
Glsi09g0112 273 PRINTS Expansin signature 189 210 IPR002963 GO:0009664
Glsi09g0112 273 PRINTS Expansin signature 153 166 IPR002963 GO:0009664
Glsi09g0112 273 PRINTS Expansin signature 254 270 IPR002963 GO:0009664
Glsi09g0112 273 PRINTS Expansin signature 117 127 IPR002963 GO:0009664
Glsi09g0112 273 PRINTS Expansin signature 177 189 IPR002963 GO:0009664
Glsi09g0112 273 PRINTS Expansin signature 77 91 IPR002963 GO:0009664
Glsi09g0112 273 SMART dpbb_1 82 168 IPR007112 -
Glsi09g0112 273 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Glsi09g0112 273 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Glsi09g0112 273 PRINTS Expansin/Lol pI family signature 254 268 IPR007118 GO:0005576
Glsi09g0112 273 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Glsi09g0112 273 PRINTS Expansin/Lol pI family signature 161 177 IPR007118 GO:0005576
Glsi09g0112 273 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Glsi09g0112 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 268 IPR007117 -
Glsi09g0112 273 Pfam Expansin C-terminal domain 180 257 IPR007117 -
Glsi09g0112 273 SUPERFAMILY Barwin-like endoglucanases 46 196 IPR036908 -
Glsi09g0112 273 Gene3D - 34 173 IPR036908 -
Glsi09g0112 273 PANTHER EXPANSIN-A15 34 268 IPR002963 GO:0009664
Glsi09g0112 273 CDD DPBB_EXPA_N 46 173 - -
Glsi09g0112 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 178 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0112 Glsi-ChrGlsi09 886454 887387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0112 39 273 Expansin Gene Family AT1G12560 70.638 3.23e-123 350