Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0109 ATGGTGAGGGGTAAAACTCAGATGAAGCGCATCGAAAATGACACAAGCAGGCAAGTAACCTTCTCAAAGCGAAGAAATGGGCTGCTTAAGAAGGCCTTCGAGCTGTCAGTGCTGTGTGATGCTGAAGTTGCACTCATCATCTTCTCTCCCAGAGGGAAGCTCTATGAATTCTCCAGTTCTAGGAAGCTTTTGGGAGATGGTTTGGATGCATGTTCCATTGACGAGTTACAGCAAATAGAGAACCAGCTGGAACGAAGCTTAAGCAAAATGAGGGCAAGAAAGAGTCAATTAATGAGTGAGCAGATTGAGAAACTAAGGGAAGAGTGTCGGATGGAAGAGAGGACTTCAACTAGGAAAGAGGATGTGGGAGTGGTGGAGGAGGTGGAGACGGACTTGTTCATAGGTCCACCTGAGAGACGAATGCCTTAA 429 0.4662 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSRKLLGDGLDACSIDELQQIENQLERSLSKMRARKSQLMSEQIEKLREECRMEERTSTRKEDVGVVEEVETDLFIGPPERRMP 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0109 142 Coils Coil 73 115 - -
Glsi09g0109 142 ProSiteProfiles K-box domain profile. 12 131 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi09g0109 142 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi09g0109 142 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi09g0109 142 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi09g0109 142 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi09g0109 142 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Glsi09g0109 142 FunFam Agamous-like MADS-box protein AGL13 13 86 - -
Glsi09g0109 142 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Glsi09g0109 142 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 107 - -
Glsi09g0109 142 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi09g0109 142 SUPERFAMILY SRF-like 3 61 IPR036879 GO:0003677|GO:0046983
Glsi09g0109 142 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi09g0109 142 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi09g0109 142 Pfam K-box region 59 112 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0109 Glsi-ChrGlsi09 872617 876992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0109 1 140 MADS-box Gene Family AT4G22950 50.000 1.16e-56 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi09g0109 K-box 2.4e-16 No_clan