Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0107 ATGCAAGAAACGGGGGTGGCAATGATGGGTGGGGGTTTAAGCGGAGAAGTGTCAGCATCCGGCGAATACCACCGAGAACTGAAGGCAGATATAGTCAGTCACCCACTTTATGAGCAGCTTGTGGCCGCCCATGTGGCTTGCCTCCGCGTCGCCACTCCGATCGATCAGCTGCCACTGATCGATGCCCAGATATCGCAGTCCCATCATCTTGTACGCTCTTATGCATCGCTGCACACCCATTCCCTTTCACCTCACGACCGTCAAGACCTCGACAACTTCCTGGAACAATATTTGATAGTGTTGTGTACTTTCAAAGAACAGCTTCAGCAACATGTCAGAGTCCATGCCGTGGAAGCTGTCATGGCCTGCCGTGATATTGAAAGTACCTTACAAGCTCTCACAGGAGTAAGTTTGGGAGATGGAAGTGGGGCAACGATGTCAGATGATGAAGAAGATTCAGCGATGGATTTGTGTATGGATCAGTGTGACATGATGGGTTTTGGTCCATTACTTCCTACAGAATCAGAAAGGTCACTGATGGAAAGAGTTCGTCAGGAACTCAAGATCGAGTTGAAGCAGGGTTTCAAGTCGAGAATAGAAGATGTTAGAGAGGAAATTCTAAGGAAACGAAGAGCTGGGAAATTACCAGGTGACACAACTTCGGTGTTAAAGAAGTGGTGGCAGCAACATGCGAAGTGGCCTTATCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGATTGCAACTGAAGCAAATCAATAATTGGTTCATCAACCAGAGGAAACGCAACTGGCACAGTAGCTCTCACTCGGTCACCTCTTTAAAGTCCAAGCGCAAGAGGTAG 852 0.4812 MQETGVAMMGGGLSGEVSASGEYHRELKADIVSHPLYEQLVAAHVACLRVATPIDQLPLIDAQISQSHHLVRSYASLHTHSLSPHDRQDLDNFLEQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIESTLQALTGVSLGDGSGATMSDDEEDSAMDLCMDQCDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKKWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSSSHSVTSLKSKRKR 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0107 283 Pfam KNOX1 domain 27 68 IPR005540 GO:0003677|GO:0005634
Glsi09g0107 283 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 79 269 - -
Glsi09g0107 283 Pfam KNOX2 domain 83 134 IPR005541 GO:0003677|GO:0005634
Glsi09g0107 283 Gene3D - 205 278 - -
Glsi09g0107 283 SMART KNOX1_2 25 69 IPR005540 GO:0003677|GO:0005634
Glsi09g0107 283 SMART HOX_1 208 273 IPR001356 GO:0003677
Glsi09g0107 283 SMART KNOX2_2 80 135 IPR005541 GO:0003677|GO:0005634
Glsi09g0107 283 SUPERFAMILY Homeodomain-like 208 271 IPR009057 -
Glsi09g0107 283 FunFam homeobox protein knotted-1-like 3 isoform X1 207 268 - -
Glsi09g0107 283 ProSiteProfiles ELK domain profile. 186 206 IPR005539 GO:0003677
Glsi09g0107 283 ProSiteProfiles 'Homeobox' domain profile. 206 269 IPR001356 GO:0003677
Glsi09g0107 283 Pfam Homeobox KN domain 226 265 IPR008422 GO:0003677|GO:0006355
Glsi09g0107 283 CDD homeodomain 209 270 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0107 Glsi-ChrGlsi09 856924 859209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0107 1 282 Homeobox Transcription Factor Family AT1G62990 74.315 6.46e-162 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Glsi09g0107 KNOX2 1.9e-17 No_clan