Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0103 ATGGCAAAGAATGTGGGATTTCTAGCTATGGATATCGACTTCCCCCGCACCTGTGTTCAGCAGGAAGTATTGGTGGTTCATGATGGTGCCAGTAAAGGGAAGTATACTATTGAACTTGGACAAGATTGCATGGCATTCTGTACAGATTTAGAAGATGTCATCTCAACGAGGTCTCCAATTTTGGCTGATGCATGCTATGGAGGAACTCCTGCCCTATTGAATTGCGTCAATTGGGTGGAGAGCATCTCATGGGATGGACGCTATGGAATAGTTGTCTGTACTGACAGTGCAGCTTATTCTGAAGGGCCAGCTCGGCCCACTCGCGGAGCTGCTGCTATTGCCATGTTAATTGGTCCTGATGCTCCCATTGCTTTAGAAAGTAAACTGAGGGCAATTCATATATCTCATGCTTACGATTTTTACAAGCCTAATCTTGCTGATGAATATCCTGAAAACTTTTCAGTTGTTGATGGGAAGCTTTCCCAAACTTGTTGCATTAGGGCACTTGATTCTTGCTATAAACAATTAAGTCACAAATATGAGAAAATAGAGGAAAAACAGTTTCTTATTTCTGGTGCTGACTACTTTGTATTTCACTCCCGTTATAGCAAGGTGGCTCAGTGGACGAGATTGCAAAAGAAAAGCTGGGGCATTTTTAAACCTTATCTGGTGATGAAAACTACCAAAGCCGGGATCTTGAAAAGGTATCCCAGCAAGTTGCAAAGCCTCTATGATGCAAAGGAAACTGTTATAGATGTGCTTGTCAGACTATTAATGCAGTTTCCTCCAGAGACGCTTGTTGAAACAATGAAGCTAATGGAGCATAGGTATGGTGCCAAGGACTTTGTGACAAGCAAGGATATTAGCCTTCTATCTCCAGGCACATTCTATCTTACTGAAGTCGATTCCATGCTTCGGAGATTCTATGCACAGTCTAGTGAAAGCATGACGTCGTATCAGGAGCATGAGATGGATCAAGACGACGATGCAGGAAAGTCCGACCTCAGCAACAGTGCCGGTGACCCAGAACGAGACCCTGCTACCACTAGCACCAACTACAATAATGAAGTCTCAAAACAGACCATGTTCCATGATACAACGGATTTTCATGTCTTGCCGTTGAAGGACGAGCCCATTGATTCGGACCCTCTACCGGACCACAAGAGTCAGCTACCTCTTATTGGGGTTGTTCCTGTGGCGATGGATATGCAAATGCCAATGCCCATACCTATGCGCATGCCGGTGACTACAACTAGACGGTCGTCCACCAAGGACAGCCACACCAAGGTGGAAGGCCGCGGATGCAGGATCCGAATACCCGCCACTTGCGCAGCTCGGATCTTTCAGCTGACTCGGGAGTTAGGCCACAAGTCTGACGGCGAAACCGTACGTTGGCTTCTCGAACACGCCGAGCAGGCCATCGTCGAGGCCACTGGAACCGGCACCATTCCGGCCATCGCTGTCTCTGTCGGGGGAACTCTGAAAATTCCCACATCGTCGACATCTAACAACTCGGATGCCGAACCCACCAAGAAGCGGAAACGGCCGGCCAATAGCGAGTTCGTGGACATGAATGATGCCGTTACCCAGTCTTCAGGATTGGCCCCGGTTCAACCCGCAGTACCACTACCACAAGGTCTAGTGCCTGTCTGGGCAGTGGGAAACACCAGCATGATGGTCCCGGCGAACGCCTTTTGGATGATGCCGCCGGCGACGACAACCCCATTGGCTGGAGTTACTGGGTCCTTCAACCAACAACCTCAGATATGGGCTTTATCTCCGACAGTGACCCCCGTATTCAACATGTCGGCGAGACCCGTGTCATCTTTTGTGGGAACAACAAATATCTCAGCTGGCATATAA 1863 0.4847 MAKNVGFLAMDIDFPRTCVQQEVLVVHDGASKGKYTIELGQDCMAFCTDLEDVISTRSPILADACYGGTPALLNCVNWVESISWDGRYGIVVCTDSAAYSEGPARPTRGAAAIAMLIGPDAPIALESKLRAIHISHAYDFYKPNLADEYPENFSVVDGKLSQTCCIRALDSCYKQLSHKYEKIEEKQFLISGADYFVFHSRYSKVAQWTRLQKKSWGIFKPYLVMKTTKAGILKRYPSKLQSLYDAKETVIDVLVRLLMQFPPETLVETMKLMEHRYGAKDFVTSKDISLLSPGTFYLTEVDSMLRRFYAQSSESMTSYQEHEMDQDDDAGKSDLSNSAGDPERDPATTSTNYNNEVSKQTMFHDTTDFHVLPLKDEPIDSDPLPDHKSQLPLIGVVPVAMDMQMPMPIPMRMPVTTTRRSSTKDSHTKVEGRGCRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIVEATGTGTIPAIAVSVGGTLKIPTSSTSNNSDAEPTKKRKRPANSEFVDMNDAVTQSSGLAPVQPAVPLPQGLVPVWAVGNTSMMVPANAFWMMPPATTTPLAGVTGSFNQQPQIWALSPTVTPVFNMSARPVSSFVGTTNISAGI 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0103 620 MobiDBLite consensus disorder prediction 316 360 - -
Glsi09g0103 620 Coils Coil 166 186 - -
Glsi09g0103 620 MobiDBLite consensus disorder prediction 342 360 - -
Glsi09g0103 620 MobiDBLite consensus disorder prediction 320 334 - -
Glsi09g0103 620 SUPERFAMILY Thiolase-like 124 310 IPR016039 GO:0016746
Glsi09g0103 620 Gene3D - 234 313 IPR016039 GO:0016746
Glsi09g0103 620 Gene3D - 59 218 IPR016039 GO:0016746
Glsi09g0103 620 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 56 IPR013528 -
Glsi09g0103 620 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 63 122 IPR013528 -
Glsi09g0103 620 Gene3D - 1 57 IPR016039 GO:0016746
Glsi09g0103 620 MobiDBLite consensus disorder prediction 496 521 - -
Glsi09g0103 620 SUPERFAMILY Thiolase-like 4 120 IPR016039 GO:0016746
Glsi09g0103 620 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 55 - -
Glsi09g0103 620 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 123 207 IPR013746 GO:0004421|GO:0006084|GO:0010142
Glsi09g0103 620 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 259 311 IPR013746 GO:0004421|GO:0006084|GO:0010142
Glsi09g0103 620 MobiDBLite consensus disorder prediction 411 431 - -
Glsi09g0103 620 ProSiteProfiles TCP domain profile. 423 477 IPR017887 -
Glsi09g0103 620 Pfam TCP family transcription factor 422 514 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0103 Glsi-ChrGlsi09 839162 846784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0103 419 569 TCP Transcription Factor Family AT2G45680 59.172 2.22e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Glsi09g0103 TCP 5.1e-25 No_clan