Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0098 ATGGCCTCAACATCTTCCAAGAGGCACCCCGTGTATCATGGAATCCGGTGCCGGGGGGAAAAATGGGTCTCCGAAATCCGGGAGCCGAGTAAGACCTCACGCATATGGCTGGGAACATTCCCCACCCCAGAGATGGCGGCTGCTGCCTATGACGTCGCGGCTTTGGCCCTCAGAGGTAACCATGCTGTTCTCAACTTGCCTCACTCGGTTGCAAGGTATCCCATACCCCAGTCCGCCTCTCCTGCCCACATTCGCAGTGCGGCCACTGCTGCTGCCGCACTAGTTAAGGCTGAAGCTGAATCTGTTACTGATCAAACACAATTTCTGGACGAGGAAGCCATATTCTGCATGCCCAGTTTACTGGTGGACATGGCTGGGGGAATGCTGCTGTCCCCTCCCAGAATCATCCCACCTCCCTCTGATAATTACTCAGGCGGCGAAACTTTGTGGAGCTACTTTTGA 462 0.5519 MASTSSKRHPVYHGIRCRGEKWVSEIREPSKTSRIWLGTFPTPEMAAAAYDVAALALRGNHAVLNLPHSVARYPIPQSASPAHIRSAATAAAALVKAEAESVTDQTQFLDEEAIFCMPSLLVDMAGGMLLSPPRIIPPPSDNYSGGETLWSYF 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0098 153 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700|GO:0006355
Glsi09g0098 153 Pfam AP2 domain 10 59 IPR001471 GO:0003700|GO:0006355
Glsi09g0098 153 SMART rav1_2 11 73 IPR001471 GO:0003700|GO:0006355
Glsi09g0098 153 Gene3D AP2/ERF domain 11 69 IPR036955 GO:0003700|GO:0006355
Glsi09g0098 153 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 151 IPR045277 GO:0003700
Glsi09g0098 153 CDD AP2 12 69 IPR001471 GO:0003700|GO:0006355
Glsi09g0098 153 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0098 Glsi-ChrGlsi09 805798 806259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0098 8 152 AP2-EREBP Transcription Factor Family AT2G36450 44.828 3.19e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi09g0098 AP2 8.8e-10 CL0081