Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0088 ATGACCTCATCTTCGTCAAATAACAGCGGTAGCAACACCTATGACGTCCCTTGGGTAGAGAAGTATCGACCCACCAAGGTCATCGACATCGTTGGAAATGAGGATGCTGTCTCTAGGCTCCAAGTTATCGCTCGCGACGGCAATATGCCGAATTTAATATTAGCTGGTCCTCCTGGGACTGGGAAAACCACTAGTGTACTGGCACTTGCTCATGAGCTTCTGGGACAAAATTTCAAGGAAGCTGTGCTGGAGCTGAATGCTTCAGATGATAGAGGAATAGATGTTGTGAGGAACAAGATCAAGATGTTTGCACAAAAGAAAGTGACACTGCCTCCTGGGCGACACAAAATAGTAATACTGGATGAAGCCGACAGCATGACGTCAGGAGCTCAGCAAGCTTTGAGAAGGACAATGGAAATATATTCAAATTCCACTCGATTTGCTCTTGCATGCAATACATCGTCTAAAATTATTGAACCAATTCAGAGTAGATGTGCCATTGTGCGATTTTCTCGATTATCTGATCAAGAAATACTCAGTCGCCTCATGGTAGTGGTTGAAGCTGAAAAGGTTCCCTATGTTCCAGAAGGCCTTGAAGCCCTCATTTTCACTGCTGATGGAGATATGAGGCAGGCATTGAATAACTTGCAGGCCACATACAGTGGGTTCCGATTTGTTAACCAGGAAAATGTTTTTAAGGTTTGTGACCAGCCACATCCTTTGCATGTAAAAAATATGGTGCGTAATGTGATTGAAGGAAATTTTGATGAGGCTTGTGGGGGGCTCAAGCAGCTTTATGATTTGGGATACTCGCCCACAGATATAATCACGACACTTTTTCGTATAATAAAAAGTTATGATATGGCTGAGTACCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGCGACGGAGTTGGTTCTTATCTCCAGCTGTGTGGTCTATTGGCTAAGCTTTCTCTGGTTCGGGAAACAGCCAAAGCTGCTTGA 1005 0.4368 MTSSSSNNSGSNTYDVPWVEKYRPTKVIDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSVLALAHELLGQNFKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILSRLMVVVEAEKVPYVPEGLEALIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVIEGNFDEACGGLKQLYDLGYSPTDIITTLFRIIKSYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSLVRETAKAA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0088 334 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 17 318 - -
Glsi09g0088 334 SMART AAA_5 48 174 IPR003593 GO:0016887
Glsi09g0088 334 FunFam replication factor C subunit 2 238 330 - -
Glsi09g0088 334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 236 IPR027417 -
Glsi09g0088 334 SUPERFAMILY post-AAA+ oligomerization domain-like 237 328 IPR008921 GO:0003677|GO:0006260
Glsi09g0088 334 Gene3D - 238 330 - -
Glsi09g0088 334 CDD AAA 31 168 - -
Glsi09g0088 334 FunFam Replication factor C subunit 4 174 237 - -
Glsi09g0088 334 Gene3D - 174 237 - -
Glsi09g0088 334 CDD HLD_clamp_RFC 173 235 - -
Glsi09g0088 334 FunFam Replication factor C subunit 4 10 173 - -
Glsi09g0088 334 Pfam Replication factor C C-terminal domain 238 323 IPR013748 -
Glsi09g0088 334 Gene3D - 10 173 IPR027417 -
Glsi09g0088 334 Pfam ATPase family associated with various cellular activities (AAA) 52 170 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0088 Glsi-ChrGlsi09 717842 721358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0088 14 333 Core DNA Replication Machinery Family AT1G63160 91.562 0.0 622