Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0086 ATGGCCACGACTAGGTCACTTAACCGTTCCTCCGAGGACATCGTCGATTCAACGCCGTTTATAGGGAATTCAGGTGGCTCTTCCGATGAATTCAATTCTGGCCGTCGATTTGTTCGAAGACAGAGCCTGCGCCAAGCCGCACGGTTCCTCAGGCAAGCCAGTAGCCGTAGAATGATGCGCGAGCCGTCGATGCTGGTCAGAGAGACTGCAGCCGAGCAATTGGAAGAGAGACAGAGCGATTGGGCTTATTCCAAGCCCGTCGTGATTCTCGATATTATTTGGAACTTCGCTTTTGTTACCGTGGCCGCTGCAGTGTTGGTTTTGAGCCGAAATGAATTACCGAGCATGCCTTTGAGGTTGTGGATTGTAGGGTATGCTCTGCAATGCATCTTTCACATGTTCTGTGTTTGCGCTGAGTATAAGAGGCGGAGGCGGTACCAACGCAGCCAATTTTCGCCATCATTGTATGCAGTGCAAGAAAGGTTTGGCAGCAGTGACAATTTGAGTTCCGGTTCAAGGGAGGGTTCAGGGCAGTATGGGACATTGGCGCCATTCGATGAGGAGGGTACAAGTGTTGCAAAGCATCTGGAATCAGTCAATACAATGTTTTCATTTATTTGGTGGATCATTGGATTTTACTGGGTATCAGCTGGTGGTCAAACTTTAGCCCATGATTCTCCTCAGCTTTACTGGCTGTGTATAATTTTCCTGGCTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCGCTGGCATGCATTATTGGCATTGCTGTTTGCTGTTGTCTTCCATGTATCATTGCTCTTCTTTATGCAGTTGCAGACCAGGAAGGGGCATCAAAACAAGACATTGAGCAGTTGTCAAAATTCAAATTCCGAAGAATAGATAGTAATGAGAAAGTTGCCGGTAGTGCACAGGGACCTGTTGGAGGAATAATGACCGAATGCTTTGCTGATTTGCCAACTGAACGCATTCTTTCTGAGGAGGATGTGGAATGTTGCATCTGCCTTTCTGCTTATGATGACGGGGTTGAACTTAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAGTGGCTGTATATTAACGCTACTTGTCCCCTCTGCAAGTATAACATTTTGAAGAGTAGCAGCCATGGTCAAGAGGAAGTGTAA 1164 0.4665 MATTRSLNRSSEDIVDSTPFIGNSGGSSDEFNSGRRFVRRQSLRQAARFLRQASSRRMMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIIWNFAFVTVAAAVLVLSRNELPSMPLRLWIVGYALQCIFHMFCVCAEYKRRRRYQRSQFSPSLYAVQERFGSSDNLSSGSREGSGQYGTLAPFDEEGTSVAKHLESVNTMFSFIWWIIGFYWVSAGGQTLAHDSPQLYWLCIIFLAFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKQDIEQLSKFKFRRIDSNEKVAGSAQGPVGGIMTECFADLPTERILSEEDVECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSHGQEEV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0086 387 SUPERFAMILY RING/U-box 321 379 - -
Glsi09g0086 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 380 IPR013083 -
Glsi09g0086 387 CDD RING-H2_RNF6-like 331 373 - -
Glsi09g0086 387 FunFam E3 ubiquitin-protein ligase At1g12760 318 383 - -
Glsi09g0086 387 PANTHER TARGET OF ERK KINASE MPK-1 53 378 - -
Glsi09g0086 387 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
Glsi09g0086 387 Pfam Ring finger domain 331 373 IPR001841 -
Glsi09g0086 387 SMART ring_2 332 372 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0086 Glsi-ChrGlsi09 700307 705729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0086 24 382 C3H Transcription Factor Family AT1G68070 48.066 6.60e-115 337