Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0081 ATGGCTCGCGAACTGGGTTCTTATAGGGTTCAGCAGGGTGATCTGGATTGGAAAATGGAAATAGAGACGAGAAGAAAAGTTCGCGCTAGACGCTCAACAAAGGGATGCTGGAAAGAGGACGAGGAGGATGATTGTATAATTGAGCTAGTCAGAATGTATGGTTTTAAGAGATGGTCTGTTATTGTAAAATCCTTACCTGGCCTTATTGTGACACAATGTCGAGAGAGGTGGCACATTCACCTTCACCCAGCTGTAAAGAAAGATGCATGGACAGAAGAGGAGAAATCGGTACTTGCTATTGCTATCACCAAATCTACGGTAGTAAGTGGGCAGAAATTGCAAGGTAGAATTCTTCCTGGAAGGACTGCTAATGCTATTAAAAATAATTGGAACTGCGCCGTGAAGAAGAAATTGGATGCATCCTCACCTTATGGACGTGACATAAATGCCTCCGCCTGTGATTTCTACACTACTCAAATCAAGCCAGCAGCATGTATGTTGGTTAAAGTAGAGAGTCGGAGCCTGAATGAGATAGTTTCTCCCAAGCGGAGCTTCGGTTGA 561 0.4403 MARELGSYRVQQGDLDWKMEIETRRKVRARRSTKGCWKEDEEDDCIIELVRMYGFKRWSVIVKSLPGLIVTQCRERWHIHLHPAVKKDAWTEEEKSVLAIAITKSTVVSGQKLQGRILPGRTANAIKNNWNCAVKKKLDASSPYGRDINASACDFYTTQIKPAACMLVKVESRSLNEIVSPKRSFG 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0081 186 CDD SANT 40 81 IPR001005 -
Glsi09g0081 186 Gene3D - 33 87 - -
Glsi09g0081 186 PANTHER MYB PROTEIN-RELATED 34 148 - -
Glsi09g0081 186 ProSiteProfiles Myb-like domain profile. 40 81 IPR001005 -
Glsi09g0081 186 SUPERFAMILY Homeodomain-like 40 134 IPR009057 -
Glsi09g0081 186 FunFam Transcriptional activator Myb isoform A 33 87 - -
Glsi09g0081 186 SMART sant 86 136 IPR001005 -
Glsi09g0081 186 SMART sant 33 83 IPR001005 -
Glsi09g0081 186 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 85 IPR017930 -
Glsi09g0081 186 Pfam Myb-like DNA-binding domain 36 78 IPR001005 -
Glsi09g0081 186 Gene3D - 88 151 - -
Glsi09g0081 186 ProSiteProfiles Myb-like domain profile. 82 134 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0081 Glsi-ChrGlsi09 675087 682163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0081 34 139 MYB Transcription Factor Family AT5G02320 56.481 1.38e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi09g0081 Myb_DNA-binding 1.4e-09 CL0123