Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0074 ATGTCATTCAGCGGAACCCAACAGAAATGCAAAGCTTGTGATAAAACCGTTCATTTTATCGACACCTTATCAGCAGATGGTATTATTTATCACAAGACCTGCTTTAAATGCAGTCACTGCAACGGCCTTCTTGTGATAAGCAACTACTCCTCGATGGATGGAGTGTTGTACTGCAGGCCTCACTTTGAGCAGCTTTTCAAGAAGACTGGCAGCTTCACGAAGAACCAGACATCTGGAAAGCCTCAGAATGAGCTGACTAGGGCACCAAGCAAACTGTCCGCCATGTTCTCTGGGACTCAAGACAAATGTTCATCCTGCAAGAAAACTGTATACCCGCTGGAAAAGGTGACTGTGGAAGGAGAATTTTATCACAAATCATGCTTCAGGTGCACTCATGGTGGATGTTTCCTGACCCCTTCGTCCTATGCTGCTCTTGATGGCTTTCTTTACTGCAAGCACCATTTTGCTCAGTTGTTCAAGGAGAAAGGCAGCTATAATCACGTCAGCAAGTCTGCTTCAATGAAGAAAAACGAACTGCAACTGGCAGCCGAGTCAGAATCCAATTCGGCATCAGAACCAGAGACGACAAAGGAAGAGCAAGATGCTGAATAG 612 0.4542 MSFSGTQQKCKACDKTVHFIDTLSADGIIYHKTCFKCSHCNGLLVISNYSSMDGVLYCRPHFEQLFKKTGSFTKNQTSGKPQNELTRAPSKLSAMFSGTQDKCSSCKKTVYPLEKVTVEGEFYHKSCFRCTHGGCFLTPSSYAALDGFLYCKHHFAQLFKEKGSYNHVSKSASMKKNELQLAAESESNSASEPETTKEEQDAE 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0074 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Glsi09g0074 203 SMART lim_4 102 154 IPR001781 -
Glsi09g0074 203 SMART lim_4 9 61 IPR001781 -
Glsi09g0074 203 Pfam LIM domain 10 65 IPR001781 -
Glsi09g0074 203 Pfam LIM domain 103 158 IPR001781 -
Glsi09g0074 203 PANTHER OS06G0237300 PROTEIN 5 88 - -
Glsi09g0074 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 74 - -
Glsi09g0074 203 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Glsi09g0074 203 ProSiteProfiles LIM domain profile. 101 161 IPR001781 -
Glsi09g0074 203 CDD LIM2_SF3 103 163 - -
Glsi09g0074 203 FunFam LIM domain and actin-binding 1 4 74 - -
Glsi09g0074 203 Gene3D Cysteine Rich Protein 4 74 - -
Glsi09g0074 203 Gene3D Cysteine Rich Protein 97 167 - -
Glsi09g0074 203 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Glsi09g0074 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 95 128 - -
Glsi09g0074 203 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 129 168 - -
Glsi09g0074 203 MobiDBLite consensus disorder prediction 176 190 - -
Glsi09g0074 203 CDD LIM1_SF3 6 68 - -
Glsi09g0074 203 MobiDBLite consensus disorder prediction 176 203 - -
Glsi09g0074 203 FunFam LIM domain and actin-binding 1 97 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0074 Glsi-ChrGlsi09 625927 626881 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Glsi09g0074 LIM 1.6e-11 CL0167