Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0065 ATGGGTGATGCTTGGGATTGCATAAGCAGCCTGCAGTGCTGCGGCAACCTGTCGCCGCAGCCACACTATCCGTCGATGACAAGGTATCCCAAGGGCACGTCACCGGAAGGCGTAGACGGAAAAGCTGTTTTCAGCGTGCTGGGAATGACATGTGGTGCGTGTGCGGGATCCGTGGAAAAGGCCATCAAGCGCCTCCCCGGGATCCGACAGGCTGTGGTTGATGTCTTGAACCATAAAGCCCAGGTTTTGTACTATCCGGCCATGGTTAACGAAGAGAGAATAAGAGAGGCCATTGAAGATGCTGGATTTGAAGCCAAGTCCATTGAAGATGAATCCAACGAGACCCCGACTCAAATCTGCCGAATACACATTAAGGGTATGACTTGTACTTCTTGCTCCTCCACTGTTGAATCGGCTCTGCAAGCCATTCGAGGGGTGCAGAAAGCACAAGTGGCATTGGCAACTGAAGAAGCACAAGTCCATTATGACCCAAAGATTGTCAGTTACAACCATCTATTGAAAGCTATAGAAGACGCTGGGTTTGAAGCCATACTAATAAGCACTGGGGAACACGTATGCAAAATAGAACTCAAGATTGAAGGCATAAAAAATGAGCAATCCGTGATAGCACTTGAAAGATCTCTCCAGGCACTTCCAGGAGTTGAAAACATAGACATTTTACAGGACATTAAAAAAATTTCTATTTCTTATAAACCTTATATGACAGGACCCAGAACCTTTATCGAAGTCATAGAATCTACAGGATCTGGGGGTTTCAGAGCAATGATATTTCCGGATGGAGGAGGAAGAGAAACTCATAGGCAAGAGGAAATTAACCAATACTTTAAGTTCTTCATATGGAGTTTGGCTTTCACGATTCCTGTATTTTTGACATCCATGATCCTTATGTATGTTCCTGGAATTAAGCATGCTTTAGATATAAAAGTGGTGAATAAGCTGAATATTGGACTGATTGTGAAGTGGGAATTTTCGACCCCAGTACAGTTTATCATAGGCAGGAGATTCTACATTGGGTCTTACAAAGCTTTGCGCAATGGTTCACCTAACATGGATGTATTGATCACCTTGGGAACAAATGCAGCCTACTTCTATTCCGTATATGTTGTGGGGAGATCTGCTTTTTCTCGAGATTTCATGGGCAACGATTTCTTTGAGACCAGCTCTATGCTTATCTCATTTATTCTACTTGGAAAGTACCTGGAGGTGTTAGCAAAGGGAAAGACGTCCCAGGCAATTGCCAAACTTATGGAATTGACCCCCGACACAGCAATCTTGTTGACTCAAGACCATGAGGGTAATGTAATCAGTGAACAACAAATAGATAGCCGGTTGATACAGAAGAATGATGTGATAAAAATTGTTCCCGGCGCCAAAGTAGCATCAGATGGCTTTGTCATATGGGGACAAAGCCACATAAATGAGAGCATGATAACCGGAGAGGCAAGGCCTGTGGCGAAGAGAAAGGGTGATATGGTGATCGGAGGTACTGTGAATGGGAATGGGGTTTTGCATGTGAAGGTGAAAAGAGTTGGATCAGAGAGCGCCCTCTCCCAGATTGTTCGACTTGTTGAGTCTGCCCAGATGGCTAAAGCTCCCGTTCAGAAGCTTGCAGACCGCATTTCCAAATACTTCGTGCCTCTGGTCATTGCGCTCTCTCTTTCAACTTGGCTTTCCTGGTTTTTAGCCGGACAATTACATGCGTACCCAAAATCTTGGATACCATCCTCCATGAGTAGCTTTGAGCTTGCACTTCAGTTTGGGATCTCTGTCATGGTCATAGCCTGCCCTTGTGCTCTAGGCCTAGCCACTCCTACGGCTGTGATGGTTGGCACTGGAGTTGGTGCGACTCAGGGTGTGTTGATCAAAGGAGGCCAACCATTAGAAAGCGCACATAAGGTGAATTGCATTGTGTTCGATAAAACAGGGACTCTTACAGTTGGGAAGCCAGTCGTTGTCACCACAAAACTCATAAAGAAGACAACACTTGCAGATTTCTACGACTTTGTTGCGGCAGCAGAGGTGAACAGTGAACACCCAATAGCTAAGGCCATTGTTGAGCATGCCGAGAAGATCAGAGAGGATGAAAAGAACCCTGCCTGGCCAGAAGCACGTGATTTTGTTTCCATTTCAGGCCACGGAGTGAAGGCCATTGTTCGAAACAAGGAAATAATGGTTGGGAATAAGAAGTTGATGCAGGATCATAACATAGCCATTTCAGTGGATGCTGAAGAAATACTAGCAGAGGCTGAGAGCCTGGCACAAACCGGTATTGTAGTGTCCATAGATGGAGAAATTGCCGGAGTTTTAGCTGTATCTGACGCGTTGAAACCAGGTGCCAAAGAAGTTATTTCCATTCTTAACTCGATGAAAATCAGGAGCATCCTGGTGACAGGTGATAACTGGGGAACTGCCAATTCCATTGCCAGACAAGTTGGCATTGAAACTGTCATAGCTGAAGCCCAGCCTGAGGCTAAAGCAAATAAAGTAAAAGATTTGCAGACTGGCGGCTACACCGTGGCAATGGTGGGAGATGGCATTAACGACTCACCAGCACTTGTGGCAGCCGATGTTGGAATGGCAATTGGTGCTGGCACAGACATTGCTATTGAGGCAGCTGACATAGTTCTCATGAAGAGCAGTTTGGAGGATATAATAACTGCCATTGACCTTGCGAAGAAAACCTTCTCCCGCATACGTCTAAACTACATTTGGGCTCTGGGATACAATCTGCTGGCTATCCCAGTTGCTGCCGGCACCCTTTACCCATCCACTAGATTCCGATTACCACCATGGATTGCTGGAGCCGCAATGGCAGCCTCTTCTGTCAGTGTCGTCTGCTCCTCCCTGTTGTTAAAGAACTACAAGCGACCCCGCAAGCTAAACAACCTGGAGATAAGTAGTATTAAGATTGAATAA 2937 0.459 MGDAWDCISSLQCCGNLSPQPHYPSMTRYPKGTSPEGVDGKAVFSVLGMTCGACAGSVEKAIKRLPGIRQAVVDVLNHKAQVLYYPAMVNEERIREAIEDAGFEAKSIEDESNETPTQICRIHIKGMTCTSCSSTVESALQAIRGVQKAQVALATEEAQVHYDPKIVSYNHLLKAIEDAGFEAILISTGEHVCKIELKIEGIKNEQSVIALERSLQALPGVENIDILQDIKKISISYKPYMTGPRTFIEVIESTGSGGFRAMIFPDGGGRETHRQEEINQYFKFFIWSLAFTIPVFLTSMILMYVPGIKHALDIKVVNKLNIGLIVKWEFSTPVQFIIGRRFYIGSYKALRNGSPNMDVLITLGTNAAYFYSVYVVGRSAFSRDFMGNDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMELTPDTAILLTQDHEGNVISEQQIDSRLIQKNDVIKIVPGAKVASDGFVIWGQSHINESMITGEARPVAKRKGDMVIGGTVNGNGVLHVKVKRVGSESALSQIVRLVESAQMAKAPVQKLADRISKYFVPLVIALSLSTWLSWFLAGQLHAYPKSWIPSSMSSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQPLESAHKVNCIVFDKTGTLTVGKPVVVTTKLIKKTTLADFYDFVAAAEVNSEHPIAKAIVEHAEKIREDEKNPAWPEARDFVSISGHGVKAIVRNKEIMVGNKKLMQDHNIAISVDAEEILAEAESLAQTGIVVSIDGEIAGVLAVSDALKPGAKEVISILNSMKIRSILVTGDNWGTANSIARQVGIETVIAEAQPEAKANKVKDLQTGGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSSLEDIITAIDLAKKTFSRIRLNYIWALGYNLLAIPVAAGTLYPSTRFRLPPWIAGAAMAASSVSVVCSSLLLKNYKRPRKLNNLEISSIKIE 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0065 978 FunFam Probable copper-transporting ATPase HMA5 750 906 - -
Glsi09g0065 978 SFLD C1.7: P-type atpase like 626 900 - -
Glsi09g0065 978 SUPERFAMILY HMA, heavy metal-associated domain 116 190 IPR036163 GO:0046872
Glsi09g0065 978 NCBIfam heavy metal translocating P-type ATPase 357 958 IPR027256 GO:0006812|GO:0016020|GO:0019829
Glsi09g0065 978 ProSiteProfiles Heavy-metal-associated domain profile. 118 184 IPR006121 GO:0046872
Glsi09g0065 978 FunFam Copper-transporting ATPase HMA5 39 110 - -
Glsi09g0065 978 NCBIfam copper ion binding protein 122 183 IPR006122 GO:0005507
Glsi09g0065 978 NCBIfam copper ion binding protein 42 105 IPR006122 GO:0005507
Glsi09g0065 978 SUPERFAMILY HAD-like 643 955 IPR036412 -
Glsi09g0065 978 Gene3D - 193 263 - -
Glsi09g0065 978 Pfam haloacid dehalogenase-like hydrolase 640 863 - -
Glsi09g0065 978 ProSiteProfiles Heavy-metal-associated domain profile. 193 259 IPR006121 GO:0046872
Glsi09g0065 978 ProSitePatterns E1-E2 ATPases phosphorylation site. 646 652 IPR018303 -
Glsi09g0065 978 Pfam E1-E2 ATPase 426 622 - -
Glsi09g0065 978 SUPERFAMILY HMA, heavy metal-associated domain 41 111 IPR036163 GO:0046872
Glsi09g0065 978 Gene3D - 118 189 - -
Glsi09g0065 978 Gene3D - 39 112 - -
Glsi09g0065 978 ProSiteProfiles Heavy-metal-associated domain profile. 40 106 IPR006121 GO:0046872
Glsi09g0065 978 Pfam Heavy-metal-associated domain 43 104 IPR006121 GO:0046872
Glsi09g0065 978 Pfam Heavy-metal-associated domain 122 182 IPR006121 GO:0046872
Glsi09g0065 978 Gene3D - 611 906 IPR023214 -
Glsi09g0065 978 CDD HMA 124 183 IPR006121 GO:0046872
Glsi09g0065 978 ProSitePatterns Heavy-metal-associated domain. 46 75 IPR017969 GO:0046872
Glsi09g0065 978 ProSitePatterns Heavy-metal-associated domain. 124 153 IPR017969 GO:0046872
Glsi09g0065 978 CDD P-type_ATPase_Cu-like 285 945 - -
Glsi09g0065 978 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 14 975 - -
Glsi09g0065 978 SUPERFAMILY HMA, heavy metal-associated domain 190 256 IPR036163 GO:0046872
Glsi09g0065 978 PRINTS P-type cation-transporting ATPase superfamily signature 872 884 - -
Glsi09g0065 978 PRINTS P-type cation-transporting ATPase superfamily signature 849 868 - -
Glsi09g0065 978 PRINTS P-type cation-transporting ATPase superfamily signature 774 785 - -
Glsi09g0065 978 PRINTS P-type cation-transporting ATPase superfamily signature 796 806 - -
Glsi09g0065 978 PRINTS P-type cation-transporting ATPase superfamily signature 644 658 - -
Glsi09g0065 978 PRINTS P-type cation-transporting ATPase superfamily signature 480 494 - -
Glsi09g0065 978 SUPERFAMILY Calcium ATPase, transduction domain A 444 530 IPR008250 -
Glsi09g0065 978 SUPERFAMILY Calcium ATPase, transmembrane domain M 395 635 IPR023298 -
Glsi09g0065 978 Gene3D - 730 780 IPR023299 GO:0000166
Glsi09g0065 978 Gene3D - 651 729 IPR023299 GO:0000166
Glsi09g0065 978 SFLD p-type atpase 626 900 IPR044492 -
Glsi09g0065 978 FunFam Copper-transporting ATPase HMA5 117 188 - -
Glsi09g0065 978 PRINTS Copper-transporting ATPase 1 signature 41 66 - -
Glsi09g0065 978 PRINTS Copper-transporting ATPase 1 signature 96 116 - -
Glsi09g0065 978 PRINTS Copper-transporting ATPase 1 signature 67 90 - -
Glsi09g0065 978 PRINTS Copper-transporting ATPase 1 signature 142 163 - -
Glsi09g0065 978 FunFam Copper-transporting ATPase 1, putative 412 534 - -
Glsi09g0065 978 NCBIfam HAD-IC family P-type ATPase 397 928 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi09g0065 978 CDD HMA 43 106 IPR006121 GO:0046872
Glsi09g0065 978 Gene3D - 412 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0065 Glsi-ChrGlsi09 584480 589646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0065 41 978 Primary Pumps ATPases AT1G63440 74.310 0.0 1452