Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0060 ATGGATGGGAGAGAAGCTATGGCATTCTCTGGTGGCTCTGCTTCATATTACATGCATAGAGGAAGTGTTTCTGGGTCTGGCTCTGGAACACAGAGCGGAGGGTTTCAAGGACCCCCTGGGTTTAGAACTTTGACAAACTCGGGCTTTCCTGCTCAGTCAAATGTCCGAGGTGGTTCTGTCGGTTCTACATTTTCTGTAGAGCCTCCGCCTGCCAATTTTAGTCATGGCATTAGCATAGGTTCCTCTCCTGGAATACCTTTAAGTGAGCCCGTGAAAAAGAAAAGAGGAAGGCCCCGTAAATACGGTCCTGATGGACCAGTTGCTTTGGGATTGTCTCCGATATCGGCAACTGTGAATTCTACTCCTGGTTCAAGCACACCTTCCCAGAAACAGGGTAGAGGACGCCCACCTGGAAGTGGAAGGAAGCAACAACTAGCGACTCTGGGTGAATGGATGAACAGTTCAGCAGGACTTGCTTTTGCCCCTCATGTTATCACTATTGGAGTTGGGGAGGATATTGTAGCAAAGCTATTGTCATTTTCACAGCAGAGACCAAGGGCTCTGTGCATCATGTCAGGCACTGGCACAGTTTCTTCAGTTACTCTGCGTCAACCTGCTTCTACTAGTGTCAATGTCACTTATGAGGGCCGATTTCAAATTTTATGCCTGTCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCCCGCAATAGAACAGGTGGCGTGAGTGTTTCCCTTTCTAGTCCTGATGGTCATGTTATTGGCGGTGGTGTTGCTATGCTTATAGCTGCAAGCCCAGTGCAGGTAGTAGTGTGCAGTTTTGTATATGGAGGCCTTAAGACCAAGACCAAGCAAGTGAGCACTCCCAAAGATGAGAGTTGTGAACCTCAGCATGGTAACAAGTTAGCTACTCCGCCCACTGCTTCGCCTACTCAAAACTACTCATTATCTGCATCGGGCATTTGGCCTGGAGATCTTAAAGGCGCACACACTACTGGTATTGACTTGATGCGTGGCTGA 1020 0.4843 MDGREAMAFSGGSASYYMHRGSVSGSGSGTQSGGFQGPPGFRTLTNSGFPAQSNVRGGSVGSTFSVEPPPANFSHGISIGSSPGIPLSEPVKKKRGRPRKYGPDGPVALGLSPISATVNSTPGSSTPSQKQGRGRPPGSGRKQQLATLGEWMNSSAGLAFAPHVITIGVGEDIVAKLLSFSQQRPRALCIMSGTGTVSSVTLRQPASTSVNVTYEGRFQILCLSGSYLVAEDGGPRNRTGGVSVSLSSPDGHVIGGGVAMLIAASPVQVVVCSFVYGGLKTKTKQVSTPKDESCEPQHGNKLATPPTASPTQNYSLSASGIWPGDLKGAHTTGIDLMRG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0060 339 CDD DUF296 162 274 IPR005175 -
Glsi09g0060 339 MobiDBLite consensus disorder prediction 18 143 - -
Glsi09g0060 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 160 279 - -
Glsi09g0060 339 MobiDBLite consensus disorder prediction 113 133 - -
Glsi09g0060 339 Gene3D - 162 290 - -
Glsi09g0060 339 MobiDBLite consensus disorder prediction 300 315 - -
Glsi09g0060 339 ProSiteProfiles PPC domain profile profile. 154 296 IPR005175 -
Glsi09g0060 339 MobiDBLite consensus disorder prediction 285 315 - -
Glsi09g0060 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 62 308 IPR039605 GO:0003680
Glsi09g0060 339 MobiDBLite consensus disorder prediction 18 81 - -
Glsi09g0060 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 162 275 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0060 Glsi-ChrGlsi09 551577 555319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0060 1 339 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.081 3.99e-97 291