Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0059 ATGGGGAAAGGTAGACCTAGGGCTGTGGAAAAAGGTGTAGTAGGGCAGAGCCTCTGTGTTTCATCATCCGGGTCACTGAATATACCATCAGGGCCTGTATATTTTCCCACTGAGGATGATTTCAAGGATCCCTTGGAATATATTTACAAGATTAGACCCGAGGCTGAGCCATATGGAATTTGTAAGATTGTACCACCAAAGAGTTGGAAACCACCATTTGCTTTGGATCTAAATCTTTTCACTTTTCCGACTAAAACTCAAGCAATTCACAAGTTACAGGCTCGTCCTGCTGCATGTGACTCCAAGACTTTTGAGTTGGAGTACTCTAGATTTTTAGAGGATCACTGTGGTAAGAAGCCAAGGAAGAGGGTTGTATTTGAAGGGGAAGAACTGGACTTGTGCAAATTATTTAATGCTGTTAAGCGATTTGGGGGATATGATAAGGTGGTGAAGGAAAAGAAATGGGGGGATGTTTCTCCGTTTGTGAGGCCAGGTAGAAAAATTACAGACTGTGCAAAGCATGTCTTATCTCAATTGTACCGAGAGCATTTGCATGATTATGAGTATTTCTATAATCAGCTGAATCAAGAGACAGCTCGGAGCAGTAAGAAAGGCATGCATGAGGTTGGAAAGAGTGATAATGTGATCCAATCTTTAGGGTCGAAGAGGATTCGAAGAAGTATTGGTCGTTTGAAAGTTAAAAATTGTAAAGTACAGGAGGAAGAACATGACCAGATTTGTGAGCAATGCAGAAGTGGGTTGCATGGAGATGTGATGCTTTTGTGTGATAGGTGTGATAAGGGCTGGCATATTTATTGTCTTTCTCCACCATTGAAGGAAATTCCTCCAGGGAACTGGTATTGCTTCAATTGCTTGAATTCTGACAGGGACAGCTTTGGTTTTGTGCCTGGTAAGCATTACACCTTGGAAGGTTTTAGACGCATGGCTGATCGGTCAAGGAGGAGATGGTTTGGACCAGAACCTGTTTCAAGGGTGCAGATAGAGAAGAAATTTTGGGAGATTGTAGAGGGATTGGTTGGTGAGGTTGAGGTTATGTATGGAAGTGATCTGGATACGTCTGTCTATGGGAGTGGTTTTCCACGTGCAACCGATCAGAAACCACAGTCAATTGATGTAAAGTTATGGGATGAATACTCAGCTAACCCATGGAATCTTAATAACTTGCCTAAGTTGAAAGGGTCAATGCTTCAAGCTGTTCATCACAATATCACTGGTGTTATGGTACCCTGGCTGTATATTGGGATGCTGTTCTCATCCTTTTGCTGGCATTTTGAGGATCATTGCTTTTACTCAATGAATTATCTACACTGGGGAGAGCCAAAATGTTGGTACAGTGTTCCTGGTAGTGAAGCAAGTGCTTTTGAGAAGGTGATGAGGAGCAGTCTTCCTGATCTTTTCGATGCACAACCAGATCTGCTTTTTCAGCTTGTAACTATGTTAAACCCATCTGTCTTGCAAGAAAATGGAGTTCCAGTCTACAGCATACTTCAGGAGCCTGGGAATTTTGTCATTACCTTCCCCAGATCTTACCATGGAGGTTTCAATCTCGAGGCAGTTAATTTTGCTCCTGCTGACTGGCTACCTTATGGTGCATTTGGAGCTGATCTCTACCAGCGGTATCACAAAACTGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTATCTCAGTACAGTGATATTGATAGCAGAGTATCTCCTTATTTAAAGAAAGAATTGCTTCGAATATTTGATAAAGAGAAATCTTGGAGAGAAAAACTATGGAGAAATGGTATTGTCAAATCATCTCGGATGGCTCCTCGGGAATGTCCTCAATATGTGGGAACTGAAGAGGATCCCGCATGCATTATTTGCCAGCAGTATCTATATCTGTCTGCTGTTGCTTGCAGTTGCAGACCATCTTCTTTTGTATGTCTGGAGCACTGGGAACACCTTTGTGAGTGCAAAAGTGTAAAACTACATCTTCTCTATCGTCATTCACTTGCTGAATTGTATGACTTGGTACTTTCTATGGACAAATATACTTCTGAGGACAAAGCACAATGCAGGAATATAAGAAGGCAGTCTTCCTGTCCGGGTGCTTTGACTAAAAAGGTAAAAGGTGGCTGCATTAGTTTCACACAACTTGCCACACAATGGCTTCTGCAATCTAGTAAGATTCTTCAGAATCCTTTTTCGAGTGATGCATTTGTTTCTGCACTAAGGGAAGCTGAACAGTTTCTTTGGGCTGGTCCTGAGATGAATTCGGTTCGAGATATGGTAAAGAATTTGATTGAAGCTCAGAAGTGGGCAGAAGGGATAAGAGATTGTGTAAGAAATATTGAGTCCTGGTTGTGTCATCAGGACTCTGGTGTAGAGAAAGTTCACTTAGAATTTGTTGATGAGTTACTGAGATTTAATCCTGCACCCTGCAATGAACCTGCTTATCATAAGTTGAAGGAATATGCAGAAGGAGCAACGTTGTTAATTCAGGAGATTAATACTGTTTTGTCTAAATGTTCAAAGATGTCTGAGTTGGAAACTTTACACTCTAGAGCTTGTGGCTCTCCAATTTACTTCAAAAAGATTGACAATTTAGAGAGGAAAATTTCTTCAACTGAGGCATGGCTGCATAGAGTTAGAAGGTGCATCTCAGTAAAACTTCCTGCTGCAGTAGAGGTTGATGTTCTTTACAAGTTGAAGTCAGAGATTGTGGAGCTTCAAGTGCAACTCCCAGAGATAGCAGTGATTCAGAATCTATTAAGTCAAGCTAAATCCTGTCGCACTCAATGTGGTGACATATTAGAAGGTCCGATGAATCTGAAGAATGTTGCTTCGCTGCTTAAGGAATGGGACAGTTTTACGGTTGATGTACCAGAGTTGAGGCTTCTGAGGCAATATCATATGGATGCTGCTTCATGGGCTTCCAACTTCAACAGTGTTTTAGGGACATTGAATGAGAGGGAGGATCAAAGTAATGTAGTTGATGAATTGAAGTGTATTTTAGAAGATGGTTTATCTTTAAAAGTTCAAGTTGATGAGTTGCCATTAGTTGAGATTGAGCTGCAGAAGGCTTTTTGCCGGGAAAATGCTCTAAAGGCGCACAATTCTAAGATGTCTCTGGAATTCATTCAGCACGTCATGAAGGAGGCCAGAGTGCTACAAATTGAGGGAGAGAAATTGTTTGTCAATTTATCTCGTGTACTTGCTGTTGCCATACCTTGGGAGGAAAGGGCTAGAGAGATTCTTTCACATGAGGCATCTATTTCTGACTTTGAGGACATGATCAGGGCTTCAGAAAGCATTTTTGTGGTTCTTCCTTCTCTTAATGATGTCAAGGATGCACTATTGGAGGTTAATTCCTGGTTAAGGAGTTCAAAACCATTTTTGGTTTCTTCTACTTGTGCTTCAGATTCTTTGCAGAAAGTTGAGGACCTTCAGATGTTAGTTTCTCAGTCAAAGCTTCTTAAAATATCTTTTGAAGAAAAGAGGATGCTTGAAATAGTCCTGAAGAAGTGCAAAGAATGGGAGTGTGATGCATGTTCTCTGCTGGAAGATGCTCAGGGTATTTTTGAATTGGATGACATTGTCAATGGAATAAGCAGTGGCCTAATGTCCAAAGTTGAAAGTTTGATTGCAAGAATGCAATCTACCACAAGAACTGGTTTATCACTTGGTTTTGACTTTGACAAGATTCCAAAACTTAAAGCAACCTGTTCTACACTGCAGTGGTGCAAAAAGATCCTTTCCTTCTGCAACGTTTCTCCTTCTTTAGAGGATGTTTTGGAGGTTGCAGAAAACCTTCCTCATTCCTGTGCTACTGGCACTCTGTTGAATCTACTGATTGGTGGGGTTAAATGGCTTAGGAAAGCCTTAGAGGTAATTTCTGGACCACAAAATTTTAGAAGATGCAAGTCGAGTGATGTTGAAGATATTATTGCTGATTATCAGACTATTAATATGCACTTTGCAACCGTAATCTCTCAACTTGAAGAAGCCACTGTAAAACATAAGTTGTGGCAAGAACAGGTGCATCGATTCCTTAGTCTAAGTTCCAGGGAACGAACTTGGTTATCACTATTGCAGCTCAGGGAACTTGGAGATACCATTGCCTTTAGTTGCTCAGAACTAAATTCTATTTTATCTGAAGTTGAGAAGGTGGAGAATTGGAAGAAACGCTGCATGGATTTCATAGGAACGTCAGTCCAAAACAAGAATTCACTGCTTGATACTCTTCAGAAGATAAAACAGAGTCTAGATAGATCGTTGTTCATATATGGTAAGTCGAGAGACTGGAAGGAACAACATATATGCATCTGCTGCTTTACTGATTCTGAAGATCTGGAATATTTTACATGTTCCACTTGTAAGGACTGCTATCATATGCGGTGCGTTGGACCAACAGCAGTGGACAATGGCCATGATTATAAGTGCCCTTATTGTAAAATTTTGAAGGGTGAATCCAATTATCATAATGGAAATCTTCCGCCGAGGTTTGGGGAGAAGCGTGCTGAATTGAAAATTCTCATTGAACTTCTCTCTGATGCTGAGAATTTCTGTGCAAGGATTGATGAAATAGATGTTCTTGACCAACTTGTGGAGCAGGCCCTTGCTTGTAAATCTTGCTTGAGAGAAATAATGAACCTTGCATCAGCTAATGTTGACAAAGATTGTAGCATTATCTCTGAAAAATTGACCATCGCTATAAAGGCTAGTGAAGTGGCCGGTGTCTGTGACCAGCATGATTATTATGAGCTTGAGCTGGCTTTAGCAAGACACTTGTGGAAAATTCGAGTCAATGATATGCTAAGTAGTCTACGAAAGCCCAATATCCAACAGATTCAGAAGCATCTGCAAGAGGGACTGGCTATGGAAATATCACCTGAAGATCATCATATGCTGAAACTTACAAAAGTGAATTGCTTGTGTTTGCAGTGGGCAGAACTAGCCAAGAAGGTTGCAGTTGATTCTGGGGCACTCAACCTAGATAACGTTTTTGAAATTATTGTGGAAGGTGAAAACTTGCCTGTTGATGTGGACGAGGAACTCAGGATATTAAAAGCTCGAAGTATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCGAGAAGAATGATTTCTTGTGATCAATGTGATGAGTGGTATCACTTTGATTGCATGAAATTACCACGCAGTCAAGATGTCTACATTTGTCCTGCGTGTAGCCCGTGTACAGAAGGAATGCCAACAACGTTACTGGACCATGAGAGATTAGCTAGTGCTAAATTTGAGGAACCTAAAACTCCATCTCCAAGGCATACAAAACCAAGAAAGAAACAGAAGAGAGATGTGCCCAGTCTCACCCACAAGATGTTTGCCGCCGAGGATCAAAATAGTAACTTCAGGTATTCCAGTGGGATAGAATGTCTTAGGTGGCAAAATCGAAAGCCTTACAGAAGAGCAGCTAAGAAACGCGCTGAGCTTCGAAGTCTTTCACCATTCCTATGTATACAACAATAA 5499 0.4101 MGKGRPRAVEKGVVGQSLCVSSSGSLNIPSGPVYFPTEDDFKDPLEYIYKIRPEAEPYGICKIVPPKSWKPPFALDLNLFTFPTKTQAIHKLQARPAACDSKTFELEYSRFLEDHCGKKPRKRVVFEGEELDLCKLFNAVKRFGGYDKVVKEKKWGDVSPFVRPGRKITDCAKHVLSQLYREHLHDYEYFYNQLNQETARSSKKGMHEVGKSDNVIQSLGSKRIRRSIGRLKVKNCKVQEEEHDQICEQCRSGLHGDVMLLCDRCDKGWHIYCLSPPLKEIPPGNWYCFNCLNSDRDSFGFVPGKHYTLEGFRRMADRSRRRWFGPEPVSRVQIEKKFWEIVEGLVGEVEVMYGSDLDTSVYGSGFPRATDQKPQSIDVKLWDEYSANPWNLNNLPKLKGSMLQAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSEASAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLEAVNFAPADWLPYGAFGADLYQRYHKTAVLSHEELLCVVSQYSDIDSRVSPYLKKELLRIFDKEKSWREKLWRNGIVKSSRMAPRECPQYVGTEEDPACIICQQYLYLSAVACSCRPSSFVCLEHWEHLCECKSVKLHLLYRHSLAELYDLVLSMDKYTSEDKAQCRNIRRQSSCPGALTKKVKGGCISFTQLATQWLLQSSKILQNPFSSDAFVSALREAEQFLWAGPEMNSVRDMVKNLIEAQKWAEGIRDCVRNIESWLCHQDSGVEKVHLEFVDELLRFNPAPCNEPAYHKLKEYAEGATLLIQEINTVLSKCSKMSELETLHSRACGSPIYFKKIDNLERKISSTEAWLHRVRRCISVKLPAAVEVDVLYKLKSEIVELQVQLPEIAVIQNLLSQAKSCRTQCGDILEGPMNLKNVASLLKEWDSFTVDVPELRLLRQYHMDAASWASNFNSVLGTLNEREDQSNVVDELKCILEDGLSLKVQVDELPLVEIELQKAFCRENALKAHNSKMSLEFIQHVMKEARVLQIEGEKLFVNLSRVLAVAIPWEERAREILSHEASISDFEDMIRASESIFVVLPSLNDVKDALLEVNSWLRSSKPFLVSSTCASDSLQKVEDLQMLVSQSKLLKISFEEKRMLEIVLKKCKEWECDACSLLEDAQGIFELDDIVNGISSGLMSKVESLIARMQSTTRTGLSLGFDFDKIPKLKATCSTLQWCKKILSFCNVSPSLEDVLEVAENLPHSCATGTLLNLLIGGVKWLRKALEVISGPQNFRRCKSSDVEDIIADYQTINMHFATVISQLEEATVKHKLWQEQVHRFLSLSSRERTWLSLLQLRELGDTIAFSCSELNSILSEVEKVENWKKRCMDFIGTSVQNKNSLLDTLQKIKQSLDRSLFIYGKSRDWKEQHICICCFTDSEDLEYFTCSTCKDCYHMRCVGPTAVDNGHDYKCPYCKILKGESNYHNGNLPPRFGEKRAELKILIELLSDAENFCARIDEIDVLDQLVEQALACKSCLREIMNLASANVDKDCSIISEKLTIAIKASEVAGVCDQHDYYELELALARHLWKIRVNDMLSSLRKPNIQQIQKHLQEGLAMEISPEDHHMLKLTKVNCLCLQWAELAKKVAVDSGALNLDNVFEIIVEGENLPVDVDEELRILKARSMLYCICRKPFDPRRMISCDQCDEWYHFDCMKLPRSQDVYICPACSPCTEGMPTTLLDHERLASAKFEEPKTPSPRHTKPRKKQKRDVPSLTHKMFAAEDQNSNFRYSSGIECLRWQNRKPYRRAAKKRAELRSLSPFLCIQQ 1832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0059 1832 Pfam PLU-1-like protein 1140 1394 IPR013637 -
Glsi09g0059 1832 Pfam PLU-1-like protein 893 1177 IPR013637 -
Glsi09g0059 1832 SUPERFAMILY FYVE/PHD zinc finger 1414 1483 IPR011011 -
Glsi09g0059 1832 ProSitePatterns Zinc finger PHD-type signature. 247 291 IPR019786 -
Glsi09g0059 1832 PANTHER LYSINE-SPECIFIC DEMETHYLASE 27 999 - -
Glsi09g0059 1832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1404 1489 IPR013083 -
Glsi09g0059 1832 Gene3D Cupin 15 121 - -
Glsi09g0059 1832 ProSiteProfiles Zinc finger PHD-type profile. 244 294 IPR019787 -
Glsi09g0059 1832 SUPERFAMILY FYVE/PHD zinc finger 233 292 IPR011011 -
Glsi09g0059 1832 CDD PHD_RSF1 247 291 - -
Glsi09g0059 1832 Gene3D Cupin 288 574 - -
Glsi09g0059 1832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1679 1736 IPR013083 -
Glsi09g0059 1832 CDD ARID 100 188 - -
Glsi09g0059 1832 Pfam jmjN domain 32 65 IPR003349 -
Glsi09g0059 1832 SMART bright_3 99 193 IPR001606 GO:0003677
Glsi09g0059 1832 SMART ARID_2 95 188 - -
Glsi09g0059 1832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 287 IPR013083 -
Glsi09g0059 1832 SMART PHD_3 1439 1482 IPR001965 -
Glsi09g0059 1832 SMART PHD_3 1693 1735 IPR001965 -
Glsi09g0059 1832 SMART PHD_3 246 292 IPR001965 -
Glsi09g0059 1832 SMART cupin_9 384 545 IPR003347 -
Glsi09g0059 1832 ProSitePatterns Zinc finger PHD-type signature. 1438 1481 IPR019786 -
Glsi09g0059 1832 Pfam C5HC2 zinc finger 622 673 IPR004198 -
Glsi09g0059 1832 SUPERFAMILY Clavaminate synthase-like 369 559 - -
Glsi09g0059 1832 SUPERFAMILY FYVE/PHD zinc finger 1690 1743 IPR011011 -
Glsi09g0059 1832 FunFam Transcription factor jumonji (JmjC) domain-containing protein 19 121 - -
Glsi09g0059 1832 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Glsi09g0059 1832 Pfam PHD-finger 246 293 IPR019787 -
Glsi09g0059 1832 Pfam PHD-finger 1693 1737 IPR019787 -
Glsi09g0059 1832 SUPERFAMILY ARID-like 82 198 IPR036431 GO:0003677
Glsi09g0059 1832 ProSiteProfiles JmjC domain profile. 384 545 IPR003347 -
Glsi09g0059 1832 ProSitePatterns Zinc finger PHD-type signature. 1694 1734 IPR019786 -
Glsi09g0059 1832 SMART JmjN_1 30 71 IPR003349 -
Glsi09g0059 1832 Pfam ARID/BRIGHT DNA binding domain 104 188 IPR001606 GO:0003677
Glsi09g0059 1832 MobiDBLite consensus disorder prediction 1754 1782 - -
Glsi09g0059 1832 Pfam JmjC domain, hydroxylase 417 524 IPR003347 -
Glsi09g0059 1832 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0059 Glsi-ChrGlsi09 523927 549344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0059 40 95 JUMONJI Transcription Factor Family AT4G20400 51.667 6.77e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Glsi09g0059 PLU-1 2.6e-12 No_clan