Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0056 ATGCGGAAGTTTCTGGGAAATCAAAATATGTTTGGGATGGGTTGTGAGTTTTCCAAGTTCTCAGCGTGCTGCTCGGGTACAGAACAAAGTGGTCCAGTTCCTGATACCCACATTGATGAAAACGAAGAGAATAGTGAAGCTACTGATTTACCGCCATTTCATGAATACACCATCGATCAACTTAGGAAGGCTACCTCTGGATTTGCAGTAGAAAATATAGTTTCTGAGCATGGAGAAAAGGCTCCAAATGTGGTTTATAAAGGGAAATTAGAAAATCAAACTCGAATTGCTGTCAAACGGTTCAATAGATCAGCCTGGCCTGATGGCCGGCAATTTTCGGAAGAAGCCAGAGCTGTTGGTCAGCTACGGAACCAACGGTTGGCAAATCTACTTGGATGTTGCTGTGAAGGTGATGAGAGGTTACTTGTTGCAGAATATTTTCCCAATGATACATTGGCAAAGCACTTGTTCCACTGGGAAACTCAGCCCATGAAATGGGCAATGCGACTGAGAGTTGCTTTATACCTTGCCCAAGCTCTGGAATACTGTACAAGCAAAGGCCGTGCCCTATACCATGATCTAAATGCTTATAGAGTTCTTTTTGATGATGAAGGAAATCCTAGACTTTCGTGCTTTGGTTTGATGAAAAACAGTCGAGATGGTAAAAGTTATAGTACAAACCTGGCATTTACTCCGCCTGAGTATCTGAGGACAGGTAGAGTTACTCCTGAAAGTGTAATGTATAGCTTTGGGACCCTTTTGCTTGACCTACTCAGTGGAAAACATATTCCTCCAAGCCATGCACTTGACCTGATTCGGGACAGGAACCTCCAAATGCTAACAGATTCTTGTTTAGAAGGACAATTTTCAAATGATGAGGGAACTGAATTAGTGCGCTTAGCCTCACGATGTCTACAATCAGAACCACGGGAGCGTCCTAATCCAAAATCATTGGTGACTGCTTTAATACCTCTACAGAAGGATTCTGAGGTTCCTTCTCATGTTTTGATGGGTATACCCCATGGTACTGCTGCTTTACCCCTTTCACCGCTTGGGGAAGCATGTCTAAGAATGGATTTGACTGCCATCCATGAGGTCATTGAAAAGATTGGGTATAAAGATGATGAGGGTGCTGCAACCGAGCTTTCATTCCAAATGTGGACCAACCAGATGCAGGAAACATTGAACTCAAAGAAGAAGGGTGATTCAGCTTTTCGGCATAAAGACTTCAAAGCTGCAATTGATAGCTATACACAGTTCATTGATGTTGGAACCATGGTTTCTCCGACAGTTTATGCACGTCGTAGTCTGTCTTATCTCATGAGCAATATGCCCGAAGAAGCACTTAAGGATGCATTGCAGGCGCAAATAGTATCCCCCATCTGGTACATTGCATTCTATTTACAAGCTGTGGCTCTTTTTGTACTGGGAAGGGAGAATGAGGCCCAAGTGGCACTTAAAGAGGGTTCTTCAGTTGAAAGTAAAAAGAACACAAATTAG 1500 0.4307 MRKFLGNQNMFGMGCEFSKFSACCSGTEQSGPVPDTHIDENEENSEATDLPPFHEYTIDQLRKATSGFAVENIVSEHGEKAPNVVYKGKLENQTRIAVKRFNRSAWPDGRQFSEEARAVGQLRNQRLANLLGCCCEGDERLLVAEYFPNDTLAKHLFHWETQPMKWAMRLRVALYLAQALEYCTSKGRALYHDLNAYRVLFDDEGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVMYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSNDEGTELVRLASRCLQSEPRERPNPKSLVTALIPLQKDSEVPSHVLMGIPHGTAALPLSPLGEACLRMDLTAIHEVIEKIGYKDDEGAATELSFQMWTNQMQETLNSKKKGDSAFRHKDFKAAIDSYTQFIDVGTMVSPTVYARRSLSYLMSNMPEEALKDALQAQIVSPIWYIAFYLQAVALFVLGRENEAQVALKEGSSVESKKNTN 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0056 499 FunFam probable serine/threonine-protein kinase At4g35230 43 146 - -
Glsi09g0056 499 SUPERFAMILY TPR-like 398 490 IPR011990 GO:0005515
Glsi09g0056 499 Gene3D Transferase(Phosphotransferase) domain 1 148 339 - -
Glsi09g0056 499 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Glsi09g0056 499 MobiDBLite consensus disorder prediction 28 50 - -
Glsi09g0056 499 MobiDBLite consensus disorder prediction 35 49 - -
Glsi09g0056 499 SUPERFAMILY Protein kinase-like (PK-like) 43 332 IPR011009 -
Glsi09g0056 499 Pfam Protein tyrosine and serine/threonine kinase 84 321 IPR001245 GO:0004672|GO:0006468
Glsi09g0056 499 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 34 497 IPR045845 GO:0004672|GO:0009742
Glsi09g0056 499 FunFam probable serine/threonine-protein kinase At5g41260 148 339 - -
Glsi09g0056 499 ProSiteProfiles Protein kinase domain profile. 71 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g0056 499 FunFam probable serine/threonine-protein kinase At4g35230 392 499 - -
Glsi09g0056 499 Gene3D Phosphorylase Kinase; domain 1 41 146 - -
Glsi09g0056 499 Gene3D Tetratricopeptide repeat domain 392 499 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0056 Glsi-ChrGlsi09 490476 503824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0056 41 322 Glycoside Hydrolase AT3G07070 33.871 3.11e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Glsi09g0056 PK_Tyr_Ser-Thr 1.5e-25 CL0016