Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0049 ATGTATTCTGATCTCTATGTTTTGGAAGCTTGTTTCCACGGACATTCAAGCTCAGAAATGGTGTCCAATGAAGGTGGAGAGCTTCCGTTTTTCTCTGATCCTTACCATTTCCCTTCTTCCACGGGCTTTCCCATGGATGTCGAGAATTTAAACAACCAAAACCCGGGGGATGAAACTCCTCCTTCCCTTGATTCATTTCCCCCTTGTTTCTTTTCATTTTCTCCTCCAAGTACCCACCTAGAAAATCTGAGGCTTTACGAGAGGGAGTTTGGAAATTTGTGTGTTTTGGATGGGTTGGAGGCGAAAAGTGAGGAATATTGCAAAATGGGTGGTGCCGATTATACCTGCAATCAGCTCATAGTTCCTCAGTGTTACAGTAGTGGAAATGAAAACGTGTCAAGGTTGATGATGCAAAGGAGCTTCAGCAGTAACTGTTTTGATAAGAAGCCCGGATATGTGTTTGAACCAAGTTTTCAAAGCCAGGCCTTAAGCTACCCTGCACAATTACAGATGAGGAGAGTGTGCAGCACAGGAGATTTGCAGAACATCAAAGATGGCTCCTTGTTGGAGGAAGCAAACTTCAAAGTTGGGCGTTACAGTGCGGAAGAAAGAAAGGAGAGAATTTCGAAATACAGAGCCAAGAGAAGCCTCAGGAACTTCAACAAGATTATTAAGTATACATGCCGAAAGACACTAGCCGACAACAGAGCTCGCATTCGTGGTAGATTCGCCCGCAACGACGACACCAGCGACATTCCCAAACCTCCATGTTCAACCAGAGATGAAGATGAAGACCAGTTCTGGACACCATACTGCGAACTGCCGTCGGGTCTTTTGTTTGTGGAAGAAGCTTTTATCTTCTCCAGACACAAGATAAAAGGAAAGAAATGTCTTCGCCAGATGGACTGTGAAGCTGTTGATCTTCACGTAGGTGTATGGAAGATAAGACTGGAGCTACCTGATGCTTATCCTCATAAGTCTCTGTACATTGGTTTTGTGAACAAAATTTACCACCCTAATGTCGATGAAATGTCTGGCTCAGTGTGCTTAGATGTTACAAACCAGACCTGGAGTCCAATGTTCGACCTTGTTAAAGTATTTGAAGTGGTTCTTCCTCAACTTCTTCTGTATCCCAACCCATTAGATCCATTTGACACTGAAGCTGCTACCGTGATGATGTGCGATTGTGCTGCATATGAACAGAGTCAAAAGAACATGCATTGGGTGTCAAATGACGAGCTTCTGAAATCTGATACTCTGATGGCAACATATAACTTGTGTTACTTCACAAAATATTGTGAAAAATATGCCAAGCCAGAAGATATTGGGGGTTCCCAGCTGGAAAAATATACTGATGAGGAGCTGAGTGAAGACGACTATGCCTCTAGTGATGAAGCAATTGCTGGCCAACCTTATTTACTGTCTTAA 1428 0.4335 MYSDLYVLEACFHGHSSSEMVSNEGGELPFFSDPYHFPSSTGFPMDVENLNNQNPGDETPPSLDSFPPCFFSFSPPSTHLENLRLYEREFGNLCVLDGLEAKSEEYCKMGGADYTCNQLIVPQCYSSGNENVSRLMMQRSFSSNCFDKKPGYVFEPSFQSQALSYPAQLQMRRVCSTGDLQNIKDGSLLEEANFKVGRYSAEERKERISKYRAKRSLRNFNKIIKYTCRKTLADNRARIRGRFARNDDTSDIPKPPCSTRDEDEDQFWTPYCELPSGLLFVEEAFIFSRHKIKGKKCLRQMDCEAVDLHVGVWKIRLELPDAYPHKSLYIGFVNKIYHPNVDEMSGSVCLDVTNQTWSPMFDLVKVFEVVLPQLLLYPNPLDPFDTEAATVMMCDCAAYEQSQKNMHWVSNDELLKSDTLMATYNLCYFTKYCEKYAKPEDIGGSQLEKYTDEELSEDDYASSDEAIAGQPYLLS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0049 475 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 337 352 IPR023313 -
Glsi09g0049 475 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 256 414 IPR000608 -
Glsi09g0049 475 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 32 262 IPR045281 GO:0009909
Glsi09g0049 475 SMART ubc_7 277 412 - -
Glsi09g0049 475 ProSiteProfiles CCT domain profile. 204 246 IPR010402 GO:0005515
Glsi09g0049 475 Gene3D Ubiquitin Conjugating Enzyme 233 418 IPR016135 -
Glsi09g0049 475 Pfam Ubiquitin-conjugating enzyme 311 404 IPR000608 -
Glsi09g0049 475 CDD UBCc 311 401 IPR000608 -
Glsi09g0049 475 Pfam CCT motif 204 246 IPR010402 GO:0005515
Glsi09g0049 475 SUPERFAMILY UBC-like 311 402 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0049 Glsi-ChrGlsi09 414038 423218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0049 200 251 C2C2-CO-like Transcription Factor Family AT5G24930 46.154 1.49e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi09g0049 UQ_con 8.3e-24 CL0208