Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi09g0046 | ATGGGATTTCCAGTGGCATGCACCGAGCTTCTCTTCCCAAAGCTCTTTCTCCATATCCTCTCTCTATTGGGTTTCGTCAGAAAACTCATTTCCCTCCTCTTCCGCTATTTGGGTCTCCACGATTTCCTCGAACCCGACATTGCCTGGCCCGACCGGATACCCGAATTTCACTCCGCCTCTGCCATGCTGATCCGGGAAATCCTGCCCGTGGTGAAGTTCTCCGACCTGGTGGACCCTCCCGATAGCTGCGCGGTGTGTTTGTACGAATTCCAAGGGGAGGACGAGATCAGACGCCTCACAAACTGTAGGCACATCTTCCACAGGGGTTGCCTGGACCGTTGGATGGGATATGATCAGAGAACGTGCCCCCTGTGTCGAACCCCCTTAATACCCGAGGATATGCAAGAAAGCTTCAACGAGAGACTGTGGGCGGCTTCTGGGATACCTGAATTTTACCCAGAATCGGAATATCCTCATCTCACTGGTTTGTAG | 492 | 0.5305 | MGFPVACTELLFPKLFLHILSLLGFVRKLISLLFRYLGLHDFLEPDIAWPDRIPEFHSASAMLIREILPVVKFSDLVDPPDSCAVCLYEFQGEDEIRRLTNCRHIFHRGCLDRWMGYDQRTCPLCRTPLIPEDMQESFNERLWAASGIPEFYPESEYPHLTGL | 163 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi09g0046 | 163 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 19 | 145 | - | - | |
| Glsi09g0046 | 163 | SMART | ring_2 | 83 | 125 | IPR001841 | - | |
| Glsi09g0046 | 163 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 77 | 130 | IPR013083 | - | |
| Glsi09g0046 | 163 | SUPERFAMILY | RING/U-box | 64 | 132 | - | - | |
| Glsi09g0046 | 163 | ProSiteProfiles | Zinc finger RING-type profile. | 83 | 126 | IPR001841 | - | |
| Glsi09g0046 | 163 | Pfam | Ring finger domain | 81 | 126 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi09g0046 | Glsi-ChrGlsi09 | 405948 | 406439 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi09g0046 | 1 | 147 | C3H Transcription Factor Family | AT1G63840 | 59.091 | 1.01e-60 | 184 |