Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0044 ATGGTATCATCCTCAGCTGGATTCTGCTACTCGGACGGCAACCCAGCGATTCACATCCCAGGCTTTGTGTCCGACCCAGACATGTTCAACCTCACCACAGGCATCGACATGATTGCCTTCTCAAAGAATCTTCACCACACTGACACTAACGCCCTCAAATCCCCCCACCATCTACCTCCTTCCTCTTCCAAGACCACCAATTTCTATCACAGTGGGATTTCTGAAGCAAGTACCGACAATCTATTTGTGGGAGCTCAGGATTCTGCCAGTTGGCCCGACAACAGATTACTTGTGGATGATTCTTCTTTAAGGTGTGTGTTCCCTTGTGAAGGAAATGAAAGGCCCAGTCAAGGCCTTTCACTCTCTCTCAGTTCAACCAACCCTTTGAGCATTGGGTTACAATCTTTTGAACTAAGACACATTCAGCACCAACAAGATTTTGTTTCCTCAGCTAGTAGAGACAAGTTGTTGGGAAAATCAGTGAATATTAATGTTCATGAAGACGCCAATATTGTTTATGAAGGACATTTTATGCTCAAGCACTCCAAGTACTTGGTGGCTGCACAGGAACTTCTGAACGAGTTTTGCAGTCTTGGAACGAAGCAAAGTGACATAGCGAAGCAAAGGTCTCAGAAAAACAAGCAGTGGGAAGATGACAACGGGAGCGGTTCCTCGAAGAAGCATTCTATTGGCTCTCTAGAATTTGTTGAATTGCAGAAGAGAAAGACAAAGCTGCTTTCCATGCTGGAAGAGGTTGACAGAAGATACAGGCACTATTGTAATCAGATGAAGGCGGTGGTATCGTCGTTTGAAGCAGTTGCTGGGAATGGAGCGGCCGCAGTGTACTCGGCGTTGGCTTTGAAAGCCATGTCAAGACATTTCAGATGTTTGAAAGATGGGGTTATGGGTCAGATTGAGGCCACCAGGAAAGGCATGGGAGAGAAAGACCCAGTTGCACCAGGCACCACAAGAGGCGAAACACCCAAGCTCAGAATCATTGACCAAGCACTCAGACAACAAAGGGCCTTCCAGCAAATGAGCATCATGGAAACCCATCCATGGAGACCCCAACGCGGCCTTCCTGAGCGATCCGTGTCGGTTCTTCGAGCTTGGCTTTTCGAGCATTTTCTCCATCCGTACCCAAGCGATGTTGATAAACATATCTTAGCCCGCCAAACAGGTCTCTCAAGAAGTCAGGTATCAAATTGGTTTATTAATGCAAGGGTGAGGCTATGGAAGCCAATGGTGGAGGAGATGTACCTGGAAGAAGTGAAGGAGCATGAAAACAACATGGGATCTTCCGACGGGGCTACTGATCCCGACGACAATAGGCGGAATGTTGAAAATCTACCCGCAAGGCGTGTTGAAGATGAGAAGCCAACGCAGGAGCGATTGGGTCGAATAGAATCCGAGTGTGTGTCTTCCATCATCAATAACCCGGACCACAAAAACGACTCAGACACCCTCCAAGAAGAGTGTTTGGGGTTAGGGCGAGTGACGGAGACATTTGGATCGGGAGATCAGCTAGATTTTTCGTCTTATACGCATCACTCAGCTGCCATGGTTTCCTACAGTGGGGGCGTGTCGTTGACACTAGGATTACAGCAACACGGTGGAGGTCTATTCTACCCAAGGGACCAAATTGAAGATTGTCAACCGGTTCAGTACTCGCTTTTGGATGGGGAAGCTCAAAATCTTCCATACAGAAATTTGATGGGGGCACAGTTGCTGCATGACCTCGTATGA 1746 0.4765 MVSSSAGFCYSDGNPAIHIPGFVSDPDMFNLTTGIDMIAFSKNLHHTDTNALKSPHHLPPSSSKTTNFYHSGISEASTDNLFVGAQDSASWPDNRLLVDDSSLRCVFPCEGNERPSQGLSLSLSSTNPLSIGLQSFELRHIQHQQDFVSSASRDKLLGKSVNINVHEDANIVYEGHFMLKHSKYLVAAQELLNEFCSLGTKQSDIAKQRSQKNKQWEDDNGSGSSKKHSIGSLEFVELQKRKTKLLSMLEEVDRRYRHYCNQMKAVVSSFEAVAGNGAAAVYSALALKAMSRHFRCLKDGVMGQIEATRKGMGEKDPVAPGTTRGETPKLRIIDQALRQQRAFQQMSIMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEVKEHENNMGSSDGATDPDDNRRNVENLPARRVEDEKPTQERLGRIESECVSSIINNPDHKNDSDTLQEECLGLGRVTETFGSGDQLDFSSYTHHSAAMVSYSGGVSLTLGLQQHGGGLFYPRDQIEDCQPVQYSLLDGEAQNLPYRNLMGAQLLHDLV 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0044 581 CDD homeodomain 354 415 IPR001356 GO:0003677
Glsi09g0044 581 MobiDBLite consensus disorder prediction 207 224 - -
Glsi09g0044 581 FunFam BEL1-like homeodomain protein 4 357 419 - -
Glsi09g0044 581 SMART HOX_1 354 418 IPR001356 GO:0003677
Glsi09g0044 581 MobiDBLite consensus disorder prediction 426 463 - -
Glsi09g0044 581 MobiDBLite consensus disorder prediction 206 228 - -
Glsi09g0044 581 Gene3D - 357 419 - -
Glsi09g0044 581 Pfam Homeobox KN domain 371 410 IPR008422 GO:0003677|GO:0006355
Glsi09g0044 581 SMART prehox3 173 303 IPR006563 -
Glsi09g0044 581 ProSiteProfiles 'Homeobox' domain profile. 351 414 IPR001356 GO:0003677
Glsi09g0044 581 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 63 436 - -
Glsi09g0044 581 Pfam Associated with HOX 178 301 IPR006563 -
Glsi09g0044 581 SUPERFAMILY Homeodomain-like 355 420 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0044 Glsi-ChrGlsi09 395260 397952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0044 76 581 Homeobox Transcription Factor Family AT5G41410 47.059 4.82e-141 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Glsi09g0044 POX 1.3e-46 No_clan