Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0042 ATGGGTCATCATTCTTGCTGCAACCAACAGAAGGTTAAAAGAGGGCTTTGGTCTCCCGAGGAGGATGAAAAACTCATCAGATACATTACCACCCATGGCTATGGCTGTTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGCAGGTTTACTCCCGAGGAGGAGAAGTTAATTATCAGTCTTCATGGGGTCGTAGGCAACAGATGGGCGCACATAGCAAGCCACTTGCCTGGTAGAACTGACAACGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATAAGAAAGCCTTTGGTGCCTCCAACTACCAGTACTGCACAACAAAGTGGGGAACACCCCCAATTCAACTATAATACCAATCAACTAGAATTTGGGAACCAAGACATTAATGTAACAACAAAGTCAGCAGTTCAAGAAACCATATTTTCGTCGACATGCCCCGTATTTATGTTTGACACAAGTTGTCTAGATGGGACAAGCGCGGACAACGGTGACCGAGCACAAGTGTTTCAAGATGGGGTGAGTTTATGCTCGGAAACATGGAATTTGAGCCACCATCAAGTCCAAGCCCTTGCTCCTCCAGCAGCTGCTGTAGGCATGGACACTTTGCCACCCTTGATAGACAACTTGGAGAACATGGTGGCCATTGAAGGACAGTCTTGTAGTATGGACGAGGAAGGAGACATAGCCCTGGAGTGCTTGCGGAGGCAAGAGTTGAATGATTGGGTGGCTGCTACTTCTTTTGGCCGCAAAAACGCATTTAGGGTTTACAGCGATAGGAACAGAGAGAGAGAGAGTCAAGAGACGCCCGGGGAGAGGGAGCTGGGTTTTGTTGCCGCAAACATGATTATTCCTGAGAAGAACCGTCGAGAGATCTGCAAATACCTTTTCCGAGAAGGAGTTTGCTATGCCAAGAAGGACTTCAATCTGGCCAAACACCCTGACATTGATGTGCCAAATCTACAGGTGATCAAGCTGATGCAGAGTTTCAAGTCGAGGGAGTATGTCCGAGAGACCTTTGCTTGGATGCACTATTACTGGTACCTCACTAATGATGGCATTGAGTTCCTTAGAACCTACCTCAATCTTCCTTCCGAGATCGTCCCTGCTACTTTGAAGAAACAAGCTAAACCCGCCGGTAGACCATTTGGTGGTCCACCTGGCGATCGCCCTAGGGGTCCACCTCGCTTCGAAGGAGAACGGAGATTTGGTGACCGTGATGGGTACCGTGGAGGTCCCCGAGGGCCCGGTGGTGACTTTGGAGACAAGGGTGGAGCACCTGCTGACTACAGGCCTTCTTTTGGGGGTCCTGGCGGAAGGTCTGGCTTTGGTCGCGGTGCTGGTGGTTATGGAGCACCAACTAGTTCAAATCTTGCCTAA 1446 0.4862 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPLVPPTTSTAQQSGEHPQFNYNTNQLEFGNQDINVTTKSAVQETIFSSTCPVFMFDTSCLDGTSADNGDRAQVFQDGVSLCSETWNLSHHQVQALAPPAAAVGMDTLPPLIDNLENMVAIEGQSCSMDEEGDIALECLRRQELNDWVAATSFGRKNAFRVYSDRNRERESQETPGERELGFVAANMIIPEKNRREICKYLFREGVCYAKKDFNLAKHPDIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFEGERRFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRSGFGRGAGGYGAPTSSNLA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0042 481 MobiDBLite consensus disorder prediction 394 481 - -
Glsi09g0042 481 Pfam Plectin/S10 domain 306 397 IPR005326 -
Glsi09g0042 481 Gene3D - 304 407 IPR036388 -
Glsi09g0042 481 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Glsi09g0042 481 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi09g0042 481 CDD SANT 69 112 IPR001005 -
Glsi09g0042 481 MobiDBLite consensus disorder prediction 415 431 - -
Glsi09g0042 481 Gene3D - 6 66 - -
Glsi09g0042 481 CDD SANT 17 61 IPR001005 -
Glsi09g0042 481 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi09g0042 481 FunFam Transcription factor MYB26 68 137 - -
Glsi09g0042 481 PANTHER MYB DOMAIN PROTEIN 55 1 158 - -
Glsi09g0042 481 SMART sant 66 114 IPR001005 -
Glsi09g0042 481 SMART sant 13 63 IPR001005 -
Glsi09g0042 481 Gene3D - 68 139 - -
Glsi09g0042 481 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi09g0042 481 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi09g0042 481 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi09g0042 481 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi09g0042 481 FunFam MYB transcription factor 6 66 - -
Glsi09g0042 481 FunFam 40S ribosomal protein S10 304 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0042 Glsi-ChrGlsi09 384323 388402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0042 1 261 MYB Transcription Factor Family AT1G63910 53.251 7.90e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi09g0042 S10_plectin 1.9e-42 CL0123