Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g0002 ATGGGCCAACAAACCTCAACGCCGCTTCAGCAGCGTCTCCAATTCATTATGCACAGCCGTCCTGAGTGGTGGGTCTACAGCATCTTTTGGCAAGCTTCCAAAGACCGTCAATTGTTACATTGGGGCGATGGCCACTTCCGAGGTAGTAGAGAGCGAAAGGGGTTGATCAAAGAAATTCAATATCTTCCCAAGGACGACGTAGATGGGGGCCACGTCGCTGAGTTTGAATGGTTTTACACTATATCTATAACACGGTCATTTGCCGCAGGTGATGGTGTCGTTGGGCGTGCCTTTAGCTCAGCCACAGATGTTTGGTTGGCCGGAGATGACGAGTTTCAGTTGCAGTTGCACGAGTGTGAGAGAGTTAAAGAAGCTGCTAGTCATGGGATCCAAACTTTAGTGTGCATTTCCACTGCGACTGGGGTGCTTGAGCTGGGCTCCTCTGACTTGATCAACCAGAACTGGGGCCTGCTGCAATTGGCCAAATCAGTTTTTGATATGACCGACACTGATCTGGTCACTAAGCATGCCAATAGCAACCACGAGCAGGTTGATCAGATTCAGATTCCAATTTCCAAACCTAGTGTTCCCCTTTTAGGCTTTGGGTTGCATTTAAAGAAAGAGACAGAATTAGAGGAAGCGCGAGAAAAGAAAGAGCTCCTTGTGGCTAATGGATCTTCCTCCGACTCGGGACCTTCTGATTCTGACGCTGCTGATACAAGCAAGACTCGAATGGGAAGGAAAGGGAGAAAGGCAGTGAGAGCACAAGAATTGCCCCTAAACCACGTGGAGGCAGAGAGGCAACGACGAGAGAGACTGAATCAAAGATTCTATGCTCTCCGTTCTGCCGTCCCGAACGTGTCCAAAATGGACAAAGCGTCTCTACTTTCGGACGCCGTCTCCTACATTAATGAACTTAAGGCCAAAATTAATCAGCTAGAGGCTAGATTCAAGATGCATACCAAGAAATCAAAACAAGAAGCTGCAGATTATAATTATACCAATACAATGCAATACTCAATTACTGGAACGACAACGGTTGGAGTTGAGGTGAATATCGTGGGAACGGAGGCCATGATAAGGGTTCAGTGCCTGGATGTGAATCACCCAGCTGCAAGGTTGATGGGTGCTCTGAGAGACCTCGATTTACATATTCATCATGCCAGCATATCAAGAGTCAAAGAACTGATTCTGCAAGACGTTGTGGTTAGGGTTCCTCATCACTTGATGACTGAGGAGGCAATGAGAAATTCCATTATAAGCTTACTGCACGACTAA 1278 0.471 MGQQTSTPLQQRLQFIMHSRPEWWVYSIFWQASKDRQLLHWGDGHFRGSRERKGLIKEIQYLPKDDVDGGHVAEFEWFYTISITRSFAAGDGVVGRAFSSATDVWLAGDDEFQLQLHECERVKEAASHGIQTLVCISTATGVLELGSSDLINQNWGLLQLAKSVFDMTDTDLVTKHANSNHEQVDQIQIPISKPSVPLLGFGLHLKKETELEEAREKKELLVANGSSSDSGPSDSDAADTSKTRMGRKGRKAVRAQELPLNHVEAERQRRERLNQRFYALRSAVPNVSKMDKASLLSDAVSYINELKAKINQLEARFKMHTKKSKQEAADYNYTNTMQYSITGTTTVGVEVNIVGTEAMIRVQCLDVNHPAARLMGALRDLDLHIHHASISRVKELILQDVVVRVPHHLMTEEAMRNSIISLLHD 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g0002 425 Pfam Helix-loop-helix DNA-binding domain 261 306 IPR011598 GO:0046983
Glsi09g0002 425 Coils Coil 204 224 - -
Glsi09g0002 425 PANTHER MYC 6 420 IPR045084 GO:0003700|GO:0006355
Glsi09g0002 425 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 165 IPR025610 -
Glsi09g0002 425 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 260 321 IPR036638 GO:0046983
Glsi09g0002 425 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 257 306 IPR011598 GO:0046983
Glsi09g0002 425 MobiDBLite consensus disorder prediction 223 239 - -
Glsi09g0002 425 MobiDBLite consensus disorder prediction 221 253 - -
Glsi09g0002 425 SMART finulus 263 312 IPR011598 GO:0046983
Glsi09g0002 425 Coils Coil 296 323 - -
Glsi09g0002 425 Gene3D - 246 308 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g0002 Glsi-ChrGlsi09 44071 45348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g0002 9 416 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 32.370 1.09e-79 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi09g0002 bHLH-MYC_N 1.3e-39 CL0161