LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi08g2861	ATGGAAGCAAAGAATACCGAATTATCATCTTTGGGCACACAGCCAACAGAGTTCCTACCATCGGAACGCGGCATCCACGTTCAATTTGGCTTTGTTTATATTCTTTCGCGACCCAGGTCACAGGTTCCGATCTGCTTATCAATTCATACCATGGGTTCCAGGAAGGGTGATAATCCTCACTCCGGCGACGGTGCCAGTCCTGGGAAAATCTTCATTGGAGGGTTAGCCAGGGATACAACCTTGGATACATTCGTCAAGTATTTTGAGAAGTATGGAGAGATAACGGACTCAGTGATTATGAAAGATCGGCACACGGGTCGACCCAGGGGTTTCGGATTCATTACATATGCAGATCCTTCTGTTGTTGACCAAGTTATTCAGGAGAACCATGTGATCAATGGCAAACAGGTTGAGATCAAGAGGACTATTCCCAAGGGTTCATCACAAGCTAATGATTTTAAAACTAAGAAAATTTTTGTTGGTGGTATACCAACAGCAGTCAGTGAAGATGAACTGAAGAACTTCTTCTCAAAGTACGGGAAAGTTGTGGAACATGAGATCATCCGTGACCACACTACTAAACGTTCTCGTGGATTTGGATTTATTGTGTTTGACAATGAAAAAGTTGTTGATAATTTACTGGCAAATGGAAATATGATTGATATGGATGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAAGCCTCAAACCCAGCATCTCTCCCTCCATTTGGTAGTGATAGGGCACGCCCATACAGTGATGGTTATGGTGGATTTGGCGAATCTTATAGCGGTTTTGGCAGTGGCAGTTTTGGTCCTGCTTCTTATAGGTCACTTGGAGGTTTTGGCAGCAGGCTTGGTGATTACAGTGGGTATGGTGGTGGAGATGAATTTGGTGATAGTTTTGGGGGTTATGGTGGTGGTGGCTATGCAGGCTATCGAGGAGAGTCATCATTTGGCTATTCTAGTCGATATGGTTCCTATATGGGGGGCCTTGGCAGTGGATATGGTGGGAGTGGACTAGGTGCATATGGGCGAGGCACTGGGGGCTTTGGAAGCTATGGTGGACCAGGCTCTGGTGGGGGTTATGACTCTGGCCCTGGTGCTGGTTATGGTGGGCCAGGGGGACTGTATGGTAGTAGGGGAAGTTATGGTGGCAGTAGTCGCTACCATCCTTATGCAAGATAG	1194	0.4631	MEAKNTELSSLGTQPTEFLPSERGIHVQFGFVYILSRPRSQVPICLSIHTMGSRKGDNPHSGDGASPGKIFIGGLARDTTLDTFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQENHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTAVSEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDNEKVVDNLLANGNMIDMDGTQVEIKKAEPKKASNPASLPPFGSDRARPYSDGYGGFGESYSGFGSGSFGPASYRSLGGFGSRLGDYSGYGGGDEFGDSFGGYGGGGYAGYRGESSFGYSSRYGSYMGGLGSGYGGSGLGAYGRGTGGFGSYGGPGSGGGYDSGPGAGYGGPGGLYGSRGSYGGSSRYHPYAR	397

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi08g2861	397	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	156	234	IPR000504	GO:0003723
	Glsi08g2861	397	SUPERFAMILY	RNA-binding domain, RBD	57	148	IPR035979	GO:0003676
	Glsi08g2861	397	PANTHER	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	54	397	-	-
	Glsi08g2861	397	SMART	rrm1_1	69	140	IPR000504	GO:0003723
	Glsi08g2861	397	SMART	rrm1_1	157	230	IPR000504	GO:0003723
	Glsi08g2861	397	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	68	144	IPR000504	GO:0003723
	Glsi08g2861	397	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	158	224	IPR000504	GO:0003723
	Glsi08g2861	397	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	70	136	IPR000504	GO:0003723
	Glsi08g2861	397	FunFam	Heterogeneous nuclear ribonucleoprotein 1	67	148	-	-
	Glsi08g2861	397	FunFam	Heterogeneous nuclear ribonucleoprotein 1	149	273	-	-
	Glsi08g2861	397	SUPERFAMILY	RNA-binding domain, RBD	149	263	IPR035979	GO:0003676
	Glsi08g2861	397	Gene3D	-	148	274	IPR012677	-
	Glsi08g2861	397	Gene3D	-	68	147	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi08g2861	Glsi-ChrGlsi08	67057073	67060095	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi08g2861	54	243	Eukaryotic Initiation Factors Gene Family	AT1G71770	25.472	1.86e-14	73.2