LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi08g2851	ATGAATTCAACTAGACTTTCTCAACAATCCCTTCCTGGAATTGAAGTCTCAGTTCAGTCAGAAAATTATTTTCAATCTCAAGGTGTTGATTCTGTCAAAGTTGCAACTGAGAATAAAAGTAGCCTCCATCTTCAAGCAGACTTTATGGACTTGCCTCCTCAAACAGGTAATGCAACAAATTTTGTCTCAGCTGATCAAAGGGCTTTTGATACTGTTTGCGGCAGTAGTGAACATTCTACCCCACATGAGGAGCAAGTAGATGAAGAGGGAGATCAAAGAGGGAATGAAGACTCAATGATTGCTGGTGTTGGTGGCACACCATCTGAAGATGGATATAACTGGAGAAAATATGGACAAAAACAGGTTAAAGGTAGTGAGTACCCACGAAGTTACTACAAGTGTACAGATCCAAATTGTCAGGTTAAGAAGAAAGTAGAACGATCTCATGAGGGCCACATCACAGAGATCATCTATAAGGGAACTCACAACCACAGCAAACCTCCTCCAAATCGCCGATCAGCCATGGGGTCAGTTAACCCTCTTGCTGACATGCAGGTGGACATTTCTGAACATGTTGAACCAGAGAGTGGTAATAATGGTGACTTGTGCCAGACAAGTTTACAAAAGGGAAATGTAGCTGGAGCTGCTGAATGGAAGCATGACAACCTTGAAGTGACATCAACATCTGTAAGACCTGAATACTGCAACCAGTCTACTATTTTTCAGACTCAGAATAGTACTCACTTTGAATCAAGAGTTGCAGTGGATGCCTCATCTACTTTTTCTAATGATGAAGATGAAGATGATGGAGGCACCCATGGAAGTGTATCATTAGGTTATGATGGGGAAGAAGATGAATCAGAATCTAAAAGAAGGTACTTGTCATTGCCTGTTTTAATTTGTGAATATTTCTTTAAGACACTAAAATCAACAAAATATCATTTTCTCAGGAAACTGGAATCTTATGTGACGGAGTTAAGTGGAACCAGTAGAGCTATTCGTGAGCCTAGAGTTGTTGTTCAGACTACCAGCGAAGTAGATATCCTTGACGATGGATATCGTTGGCGGAAATATGGGCAAAAAGTTGTAAAAGGAAATCCTAACCCAAGGAGTTACTACAAGTGTACCAATGCAGGCTGCACAGTGAGGAAGCATGTGGAAAGAGCATCACATGACGTAAAATCTGTGATCACTACATATGAAGGAAAGCACAACCATGATGTTCCTGCTGCTCGCACTAGCAGTCATGTCAATGCTGTTGCTTCTAGCACTGTTCCTGCACAAACTTCTGCAGTTATTCAAACCCCTGTTCATACACCTGATCAGTCACAAGTTCAAATTGGCCTTGGAAGGCTTGAGAGGTCTGCTCCGGGCTCATTCAATTTAACTGGGAGACAGGCGTTAGTGCCCTCCCATGGCTTCTCCTTTGGAATGAACCAACCTGGCCTGTCTAATCTGGCAATGGCTGGATCAAATCCAGCCCAATCAAAGCTTCCTCTCATGTCTGTTCATCCATTCTTGGCGCAACAACGTCCCTCAAACGAAATGGGTTTCTTGATGCCGAAAGGAGAACCAATTGTCGAGCCTATACCAGAACGTGGACTCAATCTGCCTAGTGGTCCGTCAGTATATCAAGAAATTGTGAGCCGGATGCCACTGGGGCCGCACATTAATGCTGAAGATGGGAACCGTGGCAAGAATGTTGAGGGTGATAATAGTGGATCTGATCAGAAGATACAAATGAGAGGTGTGAGAGGGATGAATGAGTGGTCAGGGATAGTGCAGGGCTATTTTTCGTGA	1800	0.4322	MNSTRLSQQSLPGIEVSVQSENYFQSQGVDSVKVATENKSSLHLQADFMDLPPQTGNATNFVSADQRAFDTVCGSSEHSTPHEEQVDEEGDQRGNEDSMIAGVGGTPSEDGYNWRKYGQKQVKGSEYPRSYYKCTDPNCQVKKKVERSHEGHITEIIYKGTHNHSKPPPNRRSAMGSVNPLADMQVDISEHVEPESGNNGDLCQTSLQKGNVAGAAEWKHDNLEVTSTSVRPEYCNQSTIFQTQNSTHFESRVAVDASSTFSNDEDEDDGGTHGSVSLGYDGEEDESESKRRYLSLPVLICEYFFKTLKSTKYHFLRKLESYVTELSGTSRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDVKSVITTYEGKHNHDVPAARTSSHVNAVASSTVPAQTSAVIQTPVHTPDQSQVQIGLGRLERSAPGSFNLTGRQALVPSHGFSFGMNQPGLSNLAMAGSNPAQSKLPLMSVHPFLAQQRPSNEMGFLMPKGEPIVEPIPERGLNLPSGPSVYQEIVSRMPLGPHINAEDGNRGKNVEGDNSGSDQKIQMRGVRGMNEWSGIVQGYFS	599

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi08g2851	599	ProSiteProfiles	WRKY domain profile.	344	409	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g2851	599	SMART	WRKY_cls	108	166	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g2851	599	SMART	WRKY_cls	349	408	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g2851	599	FunFam	WRKY transcription factor 33	336	402	-	-
	Glsi08g2851	599	Gene3D	WRKY domain	336	402	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g2851	599	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	66	429	IPR044810	GO:0003700
	Glsi08g2851	599	MobiDBLite	consensus disorder prediction	80	95	-	-
	Glsi08g2851	599	MobiDBLite	consensus disorder prediction	72	114	-	-
	Glsi08g2851	599	Gene3D	WRKY domain	101	168	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g2851	599	SUPERFAMILY	WRKY DNA-binding domain	341	409	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g2851	599	Pfam	WRKY DNA -binding domain	109	164	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g2851	599	Pfam	WRKY DNA -binding domain	350	406	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g2851	599	MobiDBLite	consensus disorder prediction	257	284	-	-
	Glsi08g2851	599	FunFam	WRKY transcription factor	97	168	-	-
	Glsi08g2851	599	SUPERFAMILY	WRKY DNA-binding domain	106	167	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g2851	599	MobiDBLite	consensus disorder prediction	554	578	-	-
	Glsi08g2851	599	ProSiteProfiles	WRKY domain profile.	109	167	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi08g2851	Glsi-ChrGlsi08	63237160	63240277	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi08g2851	97	552	WRKY Transcription Factor Family	AT5G56270	54.545	7.80e-135	407

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Glsi08g2851		WRKY	3.8e-24	CL0274