Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2843 ATGGGTACGTCATCTGGCTCCAACATCAACCAGCAGCCTTCTTCAAAAATGCTCCCTCCACGTCAGCAGTCACGGGTTGGTGGACTTCAAACTTCGCTATCCCTAGTTTCTGCAGATCCTCGCCTCTCTCCTGAGGAACCTAGATCAAACTCTGACAATATTCGAGAATCTCCTACTGAAAGTGCCAGTTCTCGAGAAACTTGGCCCATTGCTGATGCTATTGCAGCAAAGAAGATGGAGAATGGGAAAGCAGATAATGATTGGCCCGAGCAGTCAGTCATTCGTCATGTTTCTAGTGCAGACAAAATCACTCTTCAGGATATAGCAAGAGAAAGAGTTGATATAATCTCGGAAAAGATGCATCATCTACCTGAAGAATTTCTAGAAGAGCTGAAGAACAGTCTTCGAGTTATCCTTGAGGGAGGGAATGGTTCACAGCATCGGGAGGAATTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGAACTGATTTAACAGCCAAGACATTGATTAGAGCACATCGTGTGCAGCTTGAAGTCCTTGTTGCAATAAATACTGGAATTCAGGGATTTTTGCATCCTAGCATTAGTCTTTCGCAAACTTCCCTCATTGAGATCTTTGTGTACAAGAGATGCAGAAATATAGCTTGTCAAAACCAGCTTCCAGCTGATGATTGTACCTGTGAAATATGCACCAACAGAAATGGTTTCTGCAATCTTTGCATGTGTGTAATCTGCAACAAGTTTGACTTTGAAGTAAATACATGCCGTTGGATTGGATGTGATTTATGTTCTCATTGGACTCACACAGATTGTGCCATTCGTGATCAGCTTATTTGCATGGGCCCTTCTGCAAAGAGTGGAGCAGGACCAAGTGAAATGGTTTTTAGGTGTCAAGCATGCAAGAGGACTTCAGAGCTGTTGGGTTGGGTTAAAGATGTTTTCCAGCATTGTGCACCATCCTGGGATGGGGATGCCTTAATGAGGGAACTTGATTTTGTTAGTAGGATCTTTCAAGGTAGTAAAGAGGCCCGAGGGAGGAAACTATTTTGGAAGTGTGATGATCTAAAGGACAAAATGAAAAGTGGAATAGTGGAATCAAATGCAGCTTGTCGGGCAATATTGATGTTTTTTCAAGAGCTTGAGGTGGATTCCCCAAAGAGCCTGGAAAATGGAGAAAGTGGAAGATTGATTGCTCCACAGGAGGCATGCAATAGAATTGCTGAAGTAGTGCAGGAAGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTTGAGACTTGTGATCGCGAATTAGCAGAGAAGGCCAGGGAAGCAGCAGAACTCAAGATGGACAGGCAAAAAAAGAAATTACAGATAGAAGAACTTGAGAGGATTGTGAGGCTTAAAAATGCAGAGGCTGATATGTTCCAGTTTAAGGCTAATGAGGCCAAACGAGAGGCTGAGAGGCTCCAGAGGATTGCACTTGCCAAGCCAGATAAATCAGAGGAAGAATATACTAGCAACTACTTGAAACAACGATTAAATGAAGCTGAAGCTGAGAAGCAATATCTGTATGAGAAGATCAAATTGCAGGAGAGTTCTCGTGCATCACAGAGCAGTAGTGGTGGTGATCCGTCTCAGATGCTGATGTATTCCAAAATCCATGATCTGCTCTATAGTGTTCCTCCTAAGTCAGATTGTCAGCCTAATGAGCGCAATCCTTTCCGAACAAATCCATGA 1752 0.4309 MGTSSGSNINQQPSSKMLPPRQQSRVGGLQTSLSLVSADPRLSPEEPRSNSDNIRESPTESASSRETWPIADAIAAKKMENGKADNDWPEQSVIRHVSSADKITLQDIARERVDIISEKMHHLPEEFLEELKNSLRVILEGGNGSQHREEFFILQKLVQSRTDLTAKTLIRAHRVQLEVLVAINTGIQGFLHPSISLSQTSLIEIFVYKRCRNIACQNQLPADDCTCEICTNRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDQLICMGPSAKSGAGPSEMVFRCQACKRTSELLGWVKDVFQHCAPSWDGDALMRELDFVSRIFQGSKEARGRKLFWKCDDLKDKMKSGIVESNAACRAILMFFQELEVDSPKSLENGESGRLIAPQEACNRIAEVVQEAIRKMEMVADEKMRMFKKARLALETCDRELAEKAREAAELKMDRQKKKLQIEELERIVRLKNAEADMFQFKANEAKREAERLQRIALAKPDKSEEEYTSNYLKQRLNEAEAEKQYLYEKIKLQESSRASQSSSGGDPSQMLMYSKIHDLLYSVPPKSDCQPNERNPFRTNP 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2843 583 MobiDBLite consensus disorder prediction 1 68 - -
Glsi08g2843 583 MobiDBLite consensus disorder prediction 564 583 - -
Glsi08g2843 583 Pfam Coiled-coil region of Oberon 429 562 IPR032535 -
Glsi08g2843 583 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 176 191 IPR004082 -
Glsi08g2843 583 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 202 223 IPR004082 -
Glsi08g2843 583 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 321 340 IPR004082 -
Glsi08g2843 583 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 161 176 IPR004082 -
Glsi08g2843 583 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 464 484 IPR004082 -
Glsi08g2843 583 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 119 141 IPR004082 -
Glsi08g2843 583 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 248 268 IPR004082 -
Glsi08g2843 583 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 503 525 IPR004082 -
Glsi08g2843 583 MobiDBLite consensus disorder prediction 1 38 - -
Glsi08g2843 583 Coils Coil 435 497 - -
Glsi08g2843 583 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 28 564 IPR004082 -
Glsi08g2843 583 PIRSF UCP025218 1 569 - -
Glsi08g2843 583 SMART PHD_3 241 301 IPR001965 -
Glsi08g2843 583 Pfam PHD - plant homeodomain finger protein 211 334 IPR032881 -
Glsi08g2843 583 CDD PHD_OBE1_like 241 300 IPR047578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2843 Glsi-ChrGlsi08 61870397 61873128 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2843 211 344 PHD Gene Family AT5G57380 26.119 3.76e-09 57.8