Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2822 ATGAAGAGAGAGCCGAGAATATCATGGCTGGGAGCACAAGGCATGGCGGGTTTTGTGATTGTTTTGGTTTTTCATCTAATGATGAGTACCTTAGGGTCAGGTGCTAGAAAATTGCCTTTGCAGCAGCGGCAACAACTCGGCACTGATGAGCATGCAGATTCAGCAGTTGGGCTATTGCTGGCTTTCAAGCAGTACTGTGTTTCCTCTGATCCAAACAAGTTCCTAGCCGACTGGGCAGCTGATTCTGCATCTCCCTGCATTTGGAGAGGCGTGTCCTGCTCTGCTGATGGCCTTGTCACTACACTTAATCTCACTGGTGCTGGCCTCATTGGCACCTTACACCTTCCCCGTCTCACGGCTTTGCCCGGTCTGCGTCATCTTCTCTTGCATGCCAATTCCTTCACCAATGGCGACCATACCACCCCTATCTCCACCGTCACCGCTTCATGCACTCTTGAGACCCTTGACCTCTCCGCAAACAACTTGTCAGGCTCTTTGCCAAACCTGCTCTTGTCCTATTCTCTTTCCAACTGTCAGAGTCTGATTCTGCTCAATTTCTCCCACAATCACCTCACTGCCCAATTGAACACAACTCTTTTTCTTTCCCAAAACCTTTTTCTTAAATACTTGGATCTCTCCCACAACAATTTCTCTGGAAAGTTCTCTGTCCTTGATTTCGGGCCCTGCAGCAATCTCATTTCGCTCCGTCTCTCTCACAATGCACTCTCCGACACTGATTTCCCGTCTAGCCTGAGCAACTGTCATGTTCTTGAGATTCTCGATCTATCGTACAACGAACTCCAGTTCAAAATTCAAGGGGGCTTACTGGCAAGTCTCAAGAGATTGAGGCAACTCTTTCTGGGTCATAATCACTTTTCTGGTGAAATACCTGCTGATTTGGGAATGGCTTGTCGCTCTCTTGTGGAGCTTGACCTCTCTGATAACAAGCTTTCTGGTGAGTTGCCCTTGACCTTTGCAGCGTGCTATTCTTTGCAGAGTCTCAACCTTGGTAAAAATAATCTCTCCGGCAACTTCCTTCACTCTGTCGTCAGCAACCTTTCAAGTCTTAAATATCTCTACGTACCATTCAATAACATAACCGGGCCTGTTCCCCTGTCTCTTGCCAATTGTACTCAGCTTCAGGTCCTTGACCTCAGTTCTAACGCATTTACAGGCAAGATTCCTTCTGGGTTCTGCTCTTCTGCCTATTCGCCCTCAGCCTTGGAAAAGATACTTTTAGCTGACAATTATCTTTCCGGGACGGTACCTGCGGAGCTTGGCCTATGCAACAACTTGAGAACAGTTGATTTTAGCTTCAATAATTTGAATGGTCCAATACCCTTAGAAATTTGGTTCTTGCCTAATCTTTCTGACTTAATTATGTGGGCAAACAACCTTACAGGCGAGATCCCAGAAGGCATCTGTGTCAAGGGAGGAAACTTACAGACCATGATTATTAACAACAACTTTATTTCGGGCACCATTCCTCAGTCAATTGCCAATTGCTCCAATATGATTTGGGTGTCACTTGCAAGCAATCAAATTACTGGAGAGATACCCGCTACTATTGGAAATCTAAATGAACTTGCCATCCTCCAATTGGGTAACAATTCACTTACAGGACAAATCCCACCTGAGCTTGGGAATTGTAGGAGTCTCATTTGGCTAGATTTGACTAGTAATAGCCTAACTGGTACTATACCGTCTGATCTTGCCAATCAAGCTGGCTTAATCATGCCAGGTAGTGTTTCTGGAAAGCAGTTTGCATTTGTAAGAAATGAAGGTGGGACAAGCTGCAGGGGTGCTGGAGGATTAGTAGAATTTGAGGATGTCAGAGCAGAGAGGCTGGAAAGTTTTCCTATGATCCATTCTTGTCCATTGACAAGAATATACTCTGGTATGACTGTTTATACCTTCGGCAGAAATGGCACCATGATCTACCTTGATCTCTCCTACAATTCCTTATCAGGAAATATTCCTGAAAATTTTGGTGCAATGACCTTTTTACAAGTCTTAAATTTGGGACACAATAAGCTCACTGGGCAAATTCCTGACAGCTTTGGTGGTCTGAAAGAGATAGGAGTTCTAGATCTCTCCCATAATAACCTTCAAGGATTCATACCAGGGTCATTAGGAATGTTATCTTTTCTCAGTGACCTTGATGTGTCTAATAATAATCTCACAGGCTCCATTCCTTCTGGAGGTCAGCTAACCACTTTCTCTGCATCAAGATATGAAAACAACTCTGGACTTTGTGGGGTTCCATTACCACCTTGTGGCTCTGGAAGCCACTCAGCAGGCCTTCACACCTGGAATAAGAAGCAGCCTTTGGCAGCAGGGATGGTAATTGGGCTCATTCTCTGCATCTTGTGTATTCTAGGGATTGTGTTAGCTCTTTATCAAGTGAAGAAGTACCAGAGGAAGGGGGAACGGAGAGAAAAATATATAGAAAGTCTTCCAACTTCAGGCAGCAGCAGCTGGAAACTTTCTAGCATGCCCGAGCCTCTAAGCATCAATGTTGCCACCTTTGAGAAACCTTTGCGTAAGTTGACATTTGGCCATCTTCTTGAGGCTACTAATGGTTTCAGTGCTGAAAGCTTGATAGGGTCTGGAGGGTTTGGTGAAGTCTACAAAGCTCAGCTGAGAGATGGCTGTGTGGTTGCCATCAAGAAGCTTATATACGTCACAGGTCAGGGAGACAGGGAGTTCATGGCCGAGATGGAAACTATTGGGAAGATTAAGCATCGAAACCTGGTTCCTCTGCTGGGTTACTGCAAGATAGGTGAGGAGAGGCTTCTTGTGTATGAGTACATGAAGTGGGGGAGTCTCGAGTCTGTTCTTCATGACAGGGCCAAAGGAGGAGGTTCAAAGCTTAACTGGGCAGCAAGAAAGAAGATTGCCATAGGTTCTGCAAGAGGTCTTGCATTTCTTCACCATAGCTGCATACCACACATTATACACCGGGACATGAAGTCTAGCAATGTTCTCCTTGATGAAAATTTTGAGGCTAGGGTTTCTGATTTTGGCATGGCAAGATTAGTAAATGCCCTAGACACTCATCTCAGTGTCAGCACACTTGCAGGAACACCAGGTTATGTGCCACCTGAATACTACCAGAGTTTTAGGTGCACGACAAAAGGAGATGTCTATAGTTATGGTGTTATACTGCTAGAGCTTCTCTCAGGGAAGAGGCCAATTGATGCGTCAGAGTTTGGTGATGACAACAATCTCGTTGGATGGGCAAAGCAACTTCAGAGAGAGAGAAAAATAAATGAGATACTGGATCCAGATTTTATTTTGCAGCCATCTAGTGAAGGTGAACTGTATCAGTATCTAAGAATTGCATTTGAATGTCTTGATGATAAACCATATCGGCGGCCAACCATGATACAAGTGATGGCAATGTTTAAAGATCTTCAGGTTGACCCCGAAAATGACATCCTTGATGGCCTCTCACTGAAAGAAAACATTATTGATGAAGCATGA 3486 0.4475 MKREPRISWLGAQGMAGFVIVLVFHLMMSTLGSGARKLPLQQRQQLGTDEHADSAVGLLLAFKQYCVSSDPNKFLADWAADSASPCIWRGVSCSADGLVTTLNLTGAGLIGTLHLPRLTALPGLRHLLLHANSFTNGDHTTPISTVTASCTLETLDLSANNLSGSLPNLLLSYSLSNCQSLILLNFSHNHLTAQLNTTLFLSQNLFLKYLDLSHNNFSGKFSVLDFGPCSNLISLRLSHNALSDTDFPSSLSNCHVLEILDLSYNELQFKIQGGLLASLKRLRQLFLGHNHFSGEIPADLGMACRSLVELDLSDNKLSGELPLTFAACYSLQSLNLGKNNLSGNFLHSVVSNLSSLKYLYVPFNNITGPVPLSLANCTQLQVLDLSSNAFTGKIPSGFCSSAYSPSALEKILLADNYLSGTVPAELGLCNNLRTVDFSFNNLNGPIPLEIWFLPNLSDLIMWANNLTGEIPEGICVKGGNLQTMIINNNFISGTIPQSIANCSNMIWVSLASNQITGEIPATIGNLNELAILQLGNNSLTGQIPPELGNCRSLIWLDLTSNSLTGTIPSDLANQAGLIMPGSVSGKQFAFVRNEGGTSCRGAGGLVEFEDVRAERLESFPMIHSCPLTRIYSGMTVYTFGRNGTMIYLDLSYNSLSGNIPENFGAMTFLQVLNLGHNKLTGQIPDSFGGLKEIGVLDLSHNNLQGFIPGSLGMLSFLSDLDVSNNNLTGSIPSGGQLTTFSASRYENNSGLCGVPLPPCGSGSHSAGLHTWNKKQPLAAGMVIGLILCILCILGIVLALYQVKKYQRKGERREKYIESLPTSGSSSWKLSSMPEPLSINVATFEKPLRKLTFGHLLEATNGFSAESLIGSGGFGEVYKAQLRDGCVVAIKKLIYVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKIGEERLLVYEYMKWGSLESVLHDRAKGGGSKLNWAARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNVLLDENFEARVSDFGMARLVNALDTHLSVSTLAGTPGYVPPEYYQSFRCTTKGDVYSYGVILLELLSGKRPIDASEFGDDNNLVGWAKQLQRERKINEILDPDFILQPSSEGELYQYLRIAFECLDDKPYRRPTMIQVMAMFKDLQVDPENDILDGLSLKENIIDEA 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2822 1161 Gene3D Transferase(Phosphotransferase) domain 1 938 1150 - -
Glsi08g2822 1161 Pfam Leucine rich repeat 231 292 IPR001611 GO:0005515
Glsi08g2822 1161 Pfam Leucine rich repeat 669 727 IPR001611 GO:0005515
Glsi08g2822 1161 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 638 758 - -
Glsi08g2822 1161 FunFam Serine/threonine-protein kinase BRI1-like 1 583 640 - -
Glsi08g2822 1161 Pfam Leucine rich repeat N-terminal domain 54 94 IPR013210 -
Glsi08g2822 1161 FunFam serine/threonine-protein kinase BRI1-like 2 823 937 - -
Glsi08g2822 1161 ProSitePatterns Serine/Threonine protein kinases active-site signature. 985 997 IPR008271 GO:0004672|GO:0006468
Glsi08g2822 1161 ProSitePatterns Protein kinases ATP-binding region signature. 868 891 IPR017441 GO:0005524
Glsi08g2822 1161 Pfam Leucine Rich repeat 203 219 IPR001611 GO:0005515
Glsi08g2822 1161 Pfam Leucine Rich repeat 304 320 IPR001611 GO:0005515
Glsi08g2822 1161 Gene3D Phosphorylase Kinase; domain 1 824 937 - -
Glsi08g2822 1161 SUPERFAMILY L domain-like 71 398 - -
Glsi08g2822 1161 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 647 1130 - -
Glsi08g2822 1161 ProSiteProfiles Leucine-rich repeat profile. 151 173 IPR001611 GO:0005515
Glsi08g2822 1161 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 401 580 - -
Glsi08g2822 1161 ProSiteProfiles Protein kinase domain profile. 862 1148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2822 1161 Gene3D Ribonuclease Inhibitor 126 760 IPR032675 -
Glsi08g2822 1161 Gene3D - 583 640 - -
Glsi08g2822 1161 SMART serkin_6 862 1136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2822 1161 Pfam Brassinosteroid receptor island domain 576 639 IPR045381 -
Glsi08g2822 1161 SUPERFAMILY L domain-like 371 745 - -
Glsi08g2822 1161 PRINTS Leucine-rich repeat signature 690 703 - -
Glsi08g2822 1161 PRINTS Leucine-rich repeat signature 152 165 - -
Glsi08g2822 1161 SMART LRR_typ_2 279 303 IPR003591 -
Glsi08g2822 1161 SMART LRR_typ_2 690 713 IPR003591 -
Glsi08g2822 1161 SMART LRR_typ_2 229 254 IPR003591 -
Glsi08g2822 1161 SMART LRR_typ_2 714 737 IPR003591 -
Glsi08g2822 1161 SMART LRR_typ_2 377 401 IPR003591 -
Glsi08g2822 1161 SMART LRR_typ_2 304 327 IPR003591 -
Glsi08g2822 1161 SMART LRR_typ_2 666 689 IPR003591 -
Glsi08g2822 1161 SMART LRR_typ_2 526 550 IPR003591 -
Glsi08g2822 1161 SMART LRR_typ_2 453 477 IPR003591 -
Glsi08g2822 1161 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 299 394 - -
Glsi08g2822 1161 Pfam Protein kinase domain 864 1134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g2822 1161 FunFam Brassinosteroid LRR receptor kinase 938 1141 - -
Glsi08g2822 1161 SUPERFAMILY Protein kinase-like (PK-like) 846 1142 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2822 Glsi-ChrGlsi08 56541764 56545249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2822 44 1160 Receptor kinase-like Gene Family AT1G55610 65.767 0.0 1507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Glsi08g2822 Pkinase 6.6e-45 CL0016