Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2815 ATGGACGAAGAAGCTCACCATGAGTTTCGGTCGTACACAGAGGGAAGCGATCACAGTAGTTATCAAGTGGCTAGCGGGGACCGCAACGAGAATACGAAGCAGAAAACGGCTATGGCTAAGGGTCGACGGTTTAACACCAAGCTCAAGGTTGGTGCTAAAAATGATCAGCTTCTTCAAGTCTGCTATATCTGCAACAAAGGGTTTAGCTCAGGTAAAGCTCTGGGAGGTCACATGAGAATGCACGATATTGCTAGTAACAACTGCAAGAAGGCTCAACATCCCAACGGCAATGGCGGCGCCAAACCTAACACTTGGATGCTGGTGGGTACCCCGACTTGTTGTCTCTGCAATAAGAATTTCCCATCCATGAAGTCCTTGTTTGGGCACATGAGATCTCACCCCGGAAGGGAATGGAAGGGAATTCAACCCCCTACCACTTCTCCTCCTCAACCTTCTCGCTCCACAGACGGTGCCCATTTATCCTCCTCCGCTTCATCATCTACCCTATGCTATTACGATCATATTGATTCTGTCGCAACTTCCTCTACGGTGGGTTCCGTTGTTGATCTTTCTGGCTGTCTATCGAGTTGGTCGGTAACTGCCAAGAGAGGCCGTAAGAGCCTAGCTCCCAATACAGACTCTGGGTTCTCTCCTTCTATCGGAAAGCGTCTAGAAGAAGGCGTCTATGAACTCATGATGCTGGCTTATGCGAATCCCAAGCAAGATGTTGAAGTGGCAACTGAGGTAGCTAACAACAGCACATTCGACATCGAGGGTGCTGTTGTGGAGGAGAAAAGGCCGGTGCTTCAATATGGGGGAACGCCCAAGGGAAAGCTTGCAGGTGAAGTTCATGAGTTTTCAGTTCCACCCACCAAGAAGCTAAAGATTGAAGGGGAAATCACATTTATGGACGGAGGCAGAAAAATCCTTGGGTTTGCTCCTGGAGACGATTTAGAATCAGATATTCAGAATACTGATGGATGCGCAGCTGGTGAATGCCTCAGCCTTGACCCAGAGATGAAGAAGAAAGAAAACAAGCAGAAACAGAAGAAAATGACAAGAAAGGTGAAATTAAGTGACTTAGAAACAACTCAAGAGAGCAATCACAAGTTAGTAATGGGCACTGGAACACTCAATTATAGGTCCATATGCAGCATATGCAATAAATCATTCCCAAGTCACCAAGCTTTGGGTGGTCATCGATCAAGCCATAACAAAATCAAGAACATCCAAATTATGGATGAATCCGAATCAGCAGATGTTTCGGCAGCAGAGGAGGAGAATCATACCAAGTTCTCTATTCAAGTAGATGAAGCAGAAACTGTAACTACTGGAGCTGAAGATGCCGTTCGATCAAGTCTCCAAGTAAGGGAACACCAGTGTAATATTTGCAACAAGACCTTCCCAACAGGTCAAGCCCTTGGGGGCCACAAGAGATCTCACTGGACTGGCACTGCAGAAGCTCAGCCTCAGTCAGCTCAAGCAACGTCACCTGGGGAGAACAGTGAGTCATGCACTATGGTTTTGAATTTTGATCTCAATCAGCCTCCGGCTATGGGTGAAGAAGACAATGTTCAGTCTGACTTGTTCATACCTGCAGCCGGTAATGCTTCCTTTTCAGTTACTAATTAG 1632 0.4675 MDEEAHHEFRSYTEGSDHSSYQVASGDRNENTKQKTAMAKGRRFNTKLKVGAKNDQLLQVCYICNKGFSSGKALGGHMRMHDIASNNCKKAQHPNGNGGAKPNTWMLVGTPTCCLCNKNFPSMKSLFGHMRSHPGREWKGIQPPTTSPPQPSRSTDGAHLSSSASSSTLCYYDHIDSVATSSTVGSVVDLSGCLSSWSVTAKRGRKSLAPNTDSGFSPSIGKRLEEGVYELMMLAYANPKQDVEVATEVANNSTFDIEGAVVEEKRPVLQYGGTPKGKLAGEVHEFSVPPTKKLKIEGEITFMDGGRKILGFAPGDDLESDIQNTDGCAAGECLSLDPEMKKKENKQKQKKMTRKVKLSDLETTQESNHKLVMGTGTLNYRSICSICNKSFPSHQALGGHRSSHNKIKNIQIMDESESADVSAAEEENHTKFSIQVDEAETVTTGAEDAVRSSLQVREHQCNICNKTFPTGQALGGHKRSHWTGTAEAQPQSAQATSPGENSESCTMVLNFDLNQPPAMGEEDNVQSDLFIPAAGNASFSVTN 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2815 543 ProSitePatterns Zinc finger C2H2 type domain signature. 384 404 IPR013087 -
Glsi08g2815 543 MobiDBLite consensus disorder prediction 127 161 - -
Glsi08g2815 543 SMART c2h2final6 111 133 IPR013087 -
Glsi08g2815 543 SMART c2h2final6 59 81 IPR013087 -
Glsi08g2815 543 SMART c2h2final6 459 481 IPR013087 -
Glsi08g2815 543 SMART c2h2final6 382 404 IPR013087 -
Glsi08g2815 543 MobiDBLite consensus disorder prediction 15 32 - -
Glsi08g2815 543 Pfam C2H2-type zinc finger 61 81 - -
Glsi08g2815 543 Pfam C2H2-type zinc finger 113 134 - -
Glsi08g2815 543 Pfam C2H2-type zinc finger 383 406 - -
Glsi08g2815 543 Pfam C2H2-type zinc finger 459 482 - -
Glsi08g2815 543 ProSiteProfiles Zinc finger C2H2 type domain profile. 459 481 IPR013087 -
Glsi08g2815 543 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Glsi08g2815 543 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Glsi08g2815 543 MobiDBLite consensus disorder prediction 474 504 - -
Glsi08g2815 543 ProSiteProfiles Zinc finger C2H2 type domain profile. 382 409 IPR013087 -
Glsi08g2815 543 MobiDBLite consensus disorder prediction 484 504 - -
Glsi08g2815 543 MobiDBLite consensus disorder prediction 1 38 - -
Glsi08g2815 543 ProSitePatterns Zinc finger C2H2 type domain signature. 461 481 IPR013087 -
Glsi08g2815 543 Gene3D Classic Zinc Finger 59 133 - -
Glsi08g2815 543 Gene3D Classic Zinc Finger 382 481 - -
Glsi08g2815 543 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 102 166 IPR044653 GO:0003700
Glsi08g2815 543 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Glsi08g2815 543 SUPERFAMILY beta-beta-alpha zinc fingers 383 481 IPR036236 -
Glsi08g2815 543 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2815 Glsi-ChrGlsi08 53842750 53844381 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2815 56 147 C2H2 Transcription Factor Family AT2G26940 42.727 3.24e-18 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi08g2815 zf-C2H2_6 1e-11 CL0361