Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2808 ATGCAGGGAACCGCAGCCGACGGAGAGGCCGTGGACTTCGAGCCGGAAGACGATGACTTGATGGACGAGGATGGCGGCGCCGACGTTGACGCCTCCGCCTCTCCCCATGCTCCTCCTCTCCCTAAGCTCAAATCTGCCATCACTGGCGGCGCGGCTTCCTCACTGACCGGCCCTAAGAAAACTAAAGGCCGCGGCTTTCGTCAGGAAACTGATGCTGACCGTAACACCCGCCTTTCCGGCTCCGATTTCGATTCCCTAACCACAGAGGGGGGGCCCGGTCCTCAACGATCCATTGAAGGATGGATTATTTTGGTCACTGGGGTGCATGAGGAAGCACAAGAGGATGACTTGCAAAATGCATTTGGTGAATATGGAGAGATTAAGAATCTGCATTTGAATCTTGACCGTCGCACTGGTTTTGTCAAAGGTTATGCATTGATTGAATATGAGCATGCAGAGGAAGCCCGGAATGCAATAGAGAACTTGAATGGATTTGAACTTCTTACACAAACCATTTATGTTGATTGGGCTTTTAGTAGTGGACCTATTAATGGGTCAATCAGAAGAAAAAGTGCTAGACCTACGCGTGAACGACGCTCAAGGAGCCCTCGGAGGAGATATTGA 624 0.5112 MQGTAADGEAVDFEPEDDDLMDEDGGADVDASASPHAPPLPKLKSAITGGAASSLTGPKKTKGRGFRQETDADRNTRLSGSDFDSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYEHAEEARNAIENLNGFELLTQTIYVDWAFSSGPINGSIRRKSARPTRERRSRSPRRRY 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2808 207 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 172 IPR000504 GO:0003723
Glsi08g2808 207 MobiDBLite consensus disorder prediction 192 207 - -
Glsi08g2808 207 MobiDBLite consensus disorder prediction 187 207 - -
Glsi08g2808 207 PRINTS RNA binding motif protein 8 family signature 166 178 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Glsi08g2808 207 PRINTS RNA binding motif protein 8 family signature 148 164 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Glsi08g2808 207 PRINTS RNA binding motif protein 8 family signature 55 67 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Glsi08g2808 207 PRINTS RNA binding motif protein 8 family signature 92 106 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Glsi08g2808 207 MobiDBLite consensus disorder prediction 62 78 - -
Glsi08g2808 207 MobiDBLite consensus disorder prediction 10 26 - -
Glsi08g2808 207 FunFam RNA-binding protein 8A-like 32 199 - -
Glsi08g2808 207 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Glsi08g2808 207 SMART rrm1_1 102 175 IPR000504 GO:0003723
Glsi08g2808 207 SUPERFAMILY RNA-binding domain, RBD 94 205 IPR035979 GO:0003676
Glsi08g2808 207 CDD RRM_RBM8 95 182 IPR033744 GO:0003729
Glsi08g2808 207 MobiDBLite consensus disorder prediction 1 97 - -
Glsi08g2808 207 PANTHER RNA-BINDING PROTEIN 8A 7 206 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Glsi08g2808 207 Gene3D - 51 190 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2808 103 177 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 2.23e-09 54.3