Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2795 ATGGCAGGGCCTCAAAAGAACCCTAAGCCCGAACCAAGGAAAATATTGTCACACCAAGATGGAGATCAGCAGTTTGCTGAGGTTTCGTTTGAATTTCCTTTCCATTTAGTGCCTAAGTGTTCAAATGGTCACACCTTATGCTCAGGTTGCAAACCTAGGGTCCACAATCAGTGCCCTACTTGTAGGCATGAACTTGGCAATATCAAATGTCTAGCATTGGATAAGGTGGCTGCATCTTTGGAACTTCCCTATAAATATCAAGGTTTTGGTTGCGTGGCCATATATCCATACTACAGCAAGCTAAAACATGAATCTCAATGTGCATATAGACCTTATAATTGTCCGTATGCTGGTTCAGAATGCACTGTTATTGGTGATATACCTTACCTGGTGGCCCGTCTGAAAGATGATCATAAAGTGGACATGCTAAAACTTTGA 438 0.4201 MAGPQKNPKPEPRKILSHQDGDQQFAEVSFEFPFHLVPKCSNGHTLCSGCKPRVHNQCPTCRHELGNIKCLALDKVAASLELPYKYQGFGCVAIYPYYSKLKHESQCAYRPYNCPYAGSECTVIGDIPYLVARLKDDHKVDMLKL 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2795 145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 132 IPR013083 -
Glsi08g2795 145 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 142 - -
Glsi08g2795 145 Pfam Seven in absentia protein family 68 143 IPR018121 GO:0005737|GO:0006511|GO:0007275
Glsi08g2795 145 SUPERFAMILY TRAF domain-like 85 143 - -
Glsi08g2795 145 ProSiteProfiles Zinc finger SIAH-type profile. 79 139 IPR013010 GO:0008270
Glsi08g2795 145 FunFam E3 ubiquitin-protein ligase SINAT3 76 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2795 Glsi-ChrGlsi08 49224191 49228554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2795 37 142 C3H Transcription Factor Family AT2G41980 70.755 9.01e-52 164