Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2780 ATGGTTTCTTCAGACAAAAGTGCAGTTCACAATGTTTCTTCTGATAAATTGCATCAGAGGCTGAGTTCTCATAGTGATATTACAGTGTCACAAGAGATTCATGATAATAAAATTTGTTCATCTAAACCAGAGGTAGCAAGAAGCATTCCTCCTGTTACAGCTGACAAAGAAGTGCAGGATTCTGATGCTACTGCCTATGCACTGCAATCAGATCAAGAAGGAAGCACATGTTCTTTACCACTTGAGAAAACATTGCAGAGTCCTAATACTTTTCCCTGTAGATTACAATCTGGTCGCGACAGTGCCCCTTTAAAACATGAAAAGGTCTCAAAGGATATTGTAGCTGAAAAAGAAGTGCTGGATTCTGATGCTACTGCCTGTGCACTGCAATCGGATCAAGAAAGAAGTACAAGCTCTTTACCACTTGAGAAACCTTTGCAGAACCCTAATACTGTTCCAAAATTACAATATTGTCAGGACAGTCCCTCTATAATACGTGAAAAGGTCTCAAAGGATGGATATAACTGGAGAAAATATGGCCAGAAACATGTAAGGGGGAATGAATTTATAAGAAACTATTACAAGTGTACACATCCCAACTGCCATGCAAAGAAGAAGTTGGAACAGTCAAATAGTGGGCAGATAACAGATACCATTTGCATTGGTCAGCATAATCATCCTCAAGTGAACACCCCACTACCAGTTGACTGTGTTGTGACTGCTGTGAAAGAAAGACCAGACAAACCCTCTTCTGCTGATCTGGAAGAGCAAGCATGTATTGAGCATGGATGTGTGCCTCAACAGACCAAGCCTTTAGACGCCCTTCCTATTTCAACAGTTTCTGCAAGCCATGAAGTGAAAGCTGCATATCTACAATCGACCATAATAAGAGATGAGGTTCTTACCAATGAGAGTCCTGAGTCAAAACGGCTGAAGAAAGACAATAGTAATGCTGATGTCACTGGCATTGAGAAATCAACTAGCGAATCTCGTGTTGTTGTCCAGACATCAAGTGAGGTTGATTTTGTTAATGATGGGTACCGCTGGCGCAAGTATGGGCAGAAACTAGTAAAAGGAAATCCAAATCCAAGAAGTTATTATCGCTGCTCAAATCTCGGATGCCCTGTCAAAAAGCACGTGGAAAGGGCCTCTCATGACCAGAAAATTGTAATAACTACCTACGAGGGACACCATGACCATGAAAGTCCTTCTGGAAGGACTGTTACTCATAATGGAGCAGCAAACACTCCCACAACAAACATCAATGGCAAGTCAGGAACCAAATCTAGGGTAAATTCTGTTTGTGCTCATACAGGGGAAAACACCTGCATGGACTCTAAAGACGGATTGAATGGTGAGAAAACTGGTGAATCAAAGTCTGGTGATAGGGTTGAAGTTAATGTGATCACCTCTTCTAGTGGGATTCTTGAAAGCACATCAAGTGAGCAAGAACAAAATAGCAACTCAGGTACCAAAAAAGATTCTGTCAGCCTTGAAATCATATGCCATTCAGATTCTGCGCTTCCGTGCATATTAAATGAACAGCTGAAAGATGAGGTAAGAACTACATCAGAAGACAGTAAGTATGAGTGTCTTAATGTGGCTACTGCTCATGATACTCGTGGTCCTGAAAATAAATGA 1641 0.4119 MVSSDKSAVHNVSSDKLHQRLSSHSDITVSQEIHDNKICSSKPEVARSIPPVTADKEVQDSDATAYALQSDQEGSTCSLPLEKTLQSPNTFPCRLQSGRDSAPLKHEKVSKDIVAEKEVLDSDATACALQSDQERSTSSLPLEKPLQNPNTVPKLQYCQDSPSIIREKVSKDGYNWRKYGQKHVRGNEFIRNYYKCTHPNCHAKKKLEQSNSGQITDTICIGQHNHPQVNTPLPVDCVVTAVKERPDKPSSADLEEQACIEHGCVPQQTKPLDALPISTVSASHEVKAAYLQSTIIRDEVLTNESPESKRLKKDNSNADVTGIEKSTSESRVVVQTSSEVDFVNDGYRWRKYGQKLVKGNPNPRSYYRCSNLGCPVKKHVERASHDQKIVITTYEGHHDHESPSGRTVTHNGAANTPTTNINGKSGTKSRVNSVCAHTGENTCMDSKDGLNGEKTGESKSGDRVEVNVITSSSGILESTSSEQEQNSNSGTKKDSVSLEIICHSDSALPCILNEQLKDEVRTTSEDSKYECLNVATAHDTRGPENK 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2780 546 MobiDBLite consensus disorder prediction 396 494 - -
Glsi08g2780 546 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 130 423 IPR044810 GO:0003700
Glsi08g2780 546 MobiDBLite consensus disorder prediction 305 330 - -
Glsi08g2780 546 ProSiteProfiles WRKY domain profile. 338 403 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi08g2780 546 FunFam WRKY transcription factor 159 230 - -
Glsi08g2780 546 Gene3D WRKY domain 330 396 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi08g2780 546 Gene3D WRKY domain 162 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi08g2780 546 MobiDBLite consensus disorder prediction 406 440 - -
Glsi08g2780 546 MobiDBLite consensus disorder prediction 305 319 - -
Glsi08g2780 546 FunFam WRKY transcription factor 57 329 403 - -
Glsi08g2780 546 SMART WRKY_cls 343 402 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi08g2780 546 SMART WRKY_cls 170 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi08g2780 546 SUPERFAMILY WRKY DNA-binding domain 335 403 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi08g2780 546 ProSiteProfiles WRKY domain profile. 165 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi08g2780 546 Pfam WRKY DNA -binding domain 171 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi08g2780 546 Pfam WRKY DNA -binding domain 344 401 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi08g2780 546 SUPERFAMILY WRKY DNA-binding domain 166 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi08g2780 546 MobiDBLite consensus disorder prediction 1 60 - -
Glsi08g2780 546 MobiDBLite consensus disorder prediction 130 153 - -
Glsi08g2780 546 MobiDBLite consensus disorder prediction 464 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2780 Glsi-ChrGlsi08 46923394 46926776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2780 164 423 WRKY Transcription Factor Family AT2G04880 49.254 1.03e-80 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi08g2780 WRKY 4.3e-25 CL0274