Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2774 ATGAACGATAAAATGCAATCAGACAATGGTAAGTTATTTATTGGTGGAATTTCATGGGACACAAATGAAGAGCGGCTCAGGGAGTATTTCAGTACTTATGGGGAGGTTGTGGAAACAATGATTATGAAGGATCGAATGACAGGAAGAGCACGTGGATTCGGTTTTGTTGTTTTTGCCAATCCATCTGTTGCAGAGAGAGTCATAAAAGAGAAGCACAACATTGATGGGAGGGTGGTTGAGGCGAAGAAAGCTGTTCCTAGGGATGACCAGAACATATTGAGTAGAAACAGTGGTAGCATCCATGGTTCTCCTGGTCCAGACCGCACAAAGAAGATATTTGTTGGAGGTTTAGCATCGACAGTTACAGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGGGCTATAACAGATGTTGTAGTAATGTATGACCACAACACCCAAAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAGGGAACTGTTGACAAGGTCTTACTTAAGACTTTTCATGAACTGAATGGTAAAATGGTTGAGGTCAAGCGGGCAGTTCCTAAAGAGCTATCACCAGGACGAAGCCGTAGCCCACTAGGTGCATATAACTATGGTCTTAGTAGGGTAAATAGTTTCTTAAATGGATTCACTCAGGGATATACGCCAGTTACTGTTGGAGGCTATGGACTTCATGTAGATGGAGAATTCAGTCCCATCGCTAGTGGCCGAAGTGGGTTTGCTCCATTTGGATCTGGTTATGGAATGAGTATGAATTATGAGCCCAGTTTGAGCCTGGGAATTGGAGGAAATGGCCGGGGATTAAATCCTTATTATATTGGCAGCTCAAATAGATTTAGCAGTCCTATTGGGTATGATGGTGGTAATGGAGGAAATAATTCCTTCTTCAGCTCTGTGACTCGGAATTTGTGGGGTAATGGTAGTCTTAATTATGGAACAAGCTCTACAAATTCAAGCATGTACATGGGATCAGGAAATGGTAGTATTGGAGGAAACACATTTAGCAATACTGGAGTCAGCTGGGATTCTTCCTCAATTTCTGTTCAAGGTAGAGGGAACAACATGTCACAGAGTAGTGGCAACCTTGTATGTGGAGGTGGTAACAGTAGTTATGGTTTGGGAACTGGAGGATATGGAAGAAACAGTGGCACCAATGTGGCTCCAACTTCATCATACGCTACATCAAATGGTGGTGGTTACGATGGGGCTTTTTCTGATTTTTACAATAGTAATTCAGTTTATGGAGACTCCATGTGGCGATCTTCAAATTCTAAACTAGATGAGTCTGGTCCCTTTGGTTATGGACTTGCCAGTGTAGCATCAGATGTTTCTGCAAAAAGTTCTCCTGGTTATGTTGGTGGTAATACTGTTAATAAGAGGCAGCCAATTAGGGGTTTTGGTGTATGCAATGATGATGTCATTGGAAATAGGAGTTCTAAACCCAAATTTATTGGTGATGATGATGATTATGATGGTTCAAGTCTAGTGACACTTCTCCTCCTTCCCATAACAAGGGTGGGATGTAGTCTTTTGGATCACAAGATGTCTCCTGGTTTATTGCTAGTAAAGTCTTTAGCTTGCCAAGGAAACCGTTATCAGAAAGCAGTATATAGAAGTCCTGTTACGATGTTAGAATGGTCTTTCTTTTGGTCAAGTGTCGGAATGGTCTCTAGTTCATCAACAGAGCTGCAACTTGGCCTTGTTCCCCTGGTGATGAAGTGCAAATTGTTTTTATATAGGGAGAAGTTACAAGGGGATGTTGAGGTTCGAGTTTTGAGCTACTGTATAGATTTTGGCATTTCGGAATTTGAATGA 1833 0.4163 MNDKMQSDNGKLFIGGISWDTNEERLREYFSTYGEVVETMIMKDRMTGRARGFGFVVFANPSVAERVIKEKHNIDGRVVEAKKAVPRDDQNILSRNSGSIHGSPGPDRTKKIFVGGLASTVTESDFKKYFDQFGAITDVVVMYDHNTQRPRGFGFITYDSEGTVDKVLLKTFHELNGKMVEVKRAVPKELSPGRSRSPLGAYNYGLSRVNSFLNGFTQGYTPVTVGGYGLHVDGEFSPIASGRSGFAPFGSGYGMSMNYEPSLSLGIGGNGRGLNPYYIGSSNRFSSPIGYDGGNGGNNSFFSSVTRNLWGNGSLNYGTSSTNSSMYMGSGNGSIGGNTFSNTGVSWDSSSISVQGRGNNMSQSSGNLVCGGGNSSYGLGTGGYGRNSGTNVAPTSSYATSNGGGYDGAFSDFYNSNSVYGDSMWRSSNSKLDESGPFGYGLASVASDVSAKSSPGYVGGNTVNKRQPIRGFGVCNDDVIGNRSSKPKFIGDDDDYDGSSLVTLLLLPITRVGCSLLDHKMSPGLLLVKSLACQGNRYQKAVYRSPVTMLEWSFFWSSVGMVSSSSTELQLGLVPLVMKCKLFLYREKLQGDVEVRVLSYCIDFGISEFE 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2774 610 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Glsi08g2774 610 CDD RRM1_hnRNPA_hnRNPD_like 12 82 - -
Glsi08g2774 610 Gene3D - 107 196 IPR012677 -
Glsi08g2774 610 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 468 - -
Glsi08g2774 610 FunFam Heterogeneous nuclear ribonucleoprotein 1 9 91 - -
Glsi08g2774 610 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Glsi08g2774 610 CDD RRM2_Hrp1p 111 188 - -
Glsi08g2774 610 SUPERFAMILY RNA-binding domain, RBD 4 107 IPR035979 GO:0003676
Glsi08g2774 610 SMART rrm1_1 111 183 IPR000504 GO:0003723
Glsi08g2774 610 SMART rrm1_1 11 82 IPR000504 GO:0003723
Glsi08g2774 610 SUPERFAMILY RNA-binding domain, RBD 105 206 IPR035979 GO:0003676
Glsi08g2774 610 FunFam Heterogeneous nuclear ribonucleoprotein 1 107 194 - -
Glsi08g2774 610 Gene3D - 8 92 IPR012677 -
Glsi08g2774 610 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 74 IPR000504 GO:0003723
Glsi08g2774 610 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 169 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2774 Glsi-ChrGlsi08 46096554 46109787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2774 2 291 Eukaryotic Initiation Factors Gene Family AT1G71770 26.537 7.70e-15 75.9