Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2761 ATGGGAGAGGGAGAGAGCGTAAAAGCTGAAAATAGAGAGCACGAGGAAATAGAGACATGGAACCTGAGGAAACAAACCCAAATACTGCAATTGTCCGAGAAGCTTATCAATGGCGATCTTCAGTCCAAAATAGATGCTGCCAGAGAAATCAGAAAGCTGGTGCGGAAATCGTCCTTTAAGACCCGCTCAAAATTCGCAGCTGCTGGTGTGATTCCACCCCTCGTCTACATGCTCTCTTCTTTGAACCTTGATGCTCGAGAAGCTGCTCTCCTCGCGCTCCTCAATCTCGCTGTGCGTAACGAACGAAACAAGGTGAAAATAGTGACAGCTGGTGCCATCCCTCCTCTGGTAGACCTCCTCAAGATGCAAAATAGCAGTATTCGGGAATTAGCTACTGCGGCAATCTTGACACTCTCAGCAGCTGCACCCAACAAGTGCACTATTGCAGCTTCTGGAGCTGTACCTCTCCTTATCCAGATTCTCAATTCTGGAAGCGTTCAAGGCAAAGTTGATGCTGTTACAGCCCTTCATAATCTTTCCACTAGCATTGAGAACTCCTCTGAACTTTTTGATGCTAGTGCAGTTCCCCCTCTTATCAACCTTCTTAAAGAGTGCAAGAAGTATTCCAAGTTTGCTGAAAAGGCTACAGCATTACTTGAAATCCTTTCCAATTCCGAAGATGGACGAATTGCAATCTCAAGTGCAGATGGTGGAATTTTAACACTAGTAGAGACTGTTGAAGATGGATCACTTGTCAGCACAGAGCATGCTGTTGGAGCTTTGCTATCATTATGCCTAAGCTGCCGAGAAAAATACAGGGAGCTGATCCTTAAAGAAGGAGCAATCCCAGGTCTCTTGCGACTGACAGTAGAGGGCACAACTGCGGCTCAAGATAGAGCCCGTGTGCTTCTGGATTTGCTCAGAGATTCTCCCCCAGAGAAAAGGCTAGCCTCTACAATTTTGGAGAAGATTGTTTATGACTTAGCTGGACGGGTAGATGGAGTAGATAAAGCTGCTGAAACTGCCAAGCGGTTGTTGCATGATATGGTTCAAAGAAGTATGGAGCATAGCATGAACTCCATTCAGCAGAGGGCTACATCTTCTATCCCTTCCATGAATTTATCCACATAA 1131 0.458 MGEGESVKAENREHEEIETWNLRKQTQILQLSEKLINGDLQSKIDAAREIRKLVRKSSFKTRSKFAAAGVIPPLVYMLSSLNLDAREAALLALLNLAVRNERNKVKIVTAGAIPPLVDLLKMQNSSIRELATAAILTLSAAAPNKCTIAASGAVPLLIQILNSGSVQGKVDAVTALHNLSTSIENSSELFDASAVPPLINLLKECKKYSKFAEKATALLEILSNSEDGRIAISSADGGILTLVETVEDGSLVSTEHAVGALLSLCLSCREKYRELILKEGAIPGLLRLTVEGTTAAQDRARVLLDLLRDSPPEKRLASTILEKIVYDLAGRVDGVDKAAETAKRLLHDMVQRSMEHSMNSIQQRATSSIPSMNLST 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2761 376 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 69 111 IPR000225 GO:0005515
Glsi08g2761 376 SUPERFAMILY ARM repeat 31 313 IPR016024 -
Glsi08g2761 376 MobiDBLite consensus disorder prediction 357 376 - -
Glsi08g2761 376 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 152 194 IPR000225 GO:0005515
Glsi08g2761 376 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 193 237 IPR000225 GO:0005515
Glsi08g2761 376 Gene3D - 229 366 IPR011989 -
Glsi08g2761 376 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 111 153 IPR000225 GO:0005515
Glsi08g2761 376 Gene3D - 19 227 IPR011989 -
Glsi08g2761 376 FunFam U-box domain-containing protein 4 10 367 - -
Glsi08g2761 376 PANTHER U BOX DOMAIN-CONTAINING 26 309 - -
Glsi08g2761 376 SMART arm_5 57 98 IPR000225 GO:0005515
Glsi08g2761 376 SMART arm_5 182 224 IPR000225 GO:0005515
Glsi08g2761 376 SMART arm_5 99 140 IPR000225 GO:0005515
Glsi08g2761 376 SMART arm_5 141 181 IPR000225 GO:0005515
Glsi08g2761 376 SMART arm_5 225 266 IPR000225 GO:0005515
Glsi08g2761 376 Pfam Armadillo/beta-catenin-like repeat 100 139 IPR000225 GO:0005515
Glsi08g2761 376 Pfam Armadillo/beta-catenin-like repeat 68 97 IPR000225 GO:0005515
Glsi08g2761 376 Pfam Armadillo/beta-catenin-like repeat 147 180 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2761 Glsi-ChrGlsi08 43582634 43591471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2761 25 309 U-box Gene Family AT2G23140 37.193 7.20e-40 147