Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2756 ATGCTTGCTGCTCTTGGTTTTAACCGCAAAACACATATATTTGTAGCTGGTTCTAATTTATATGAAGGTCGCTCACGGTTGGTTGGATTGATCAGCTTGTACCCTAATTTAGTCACCAAAGAGAACTTGCTTTCTTCGGCTGAACTTGAGCCGTTTGCAAATTATTCATCTCAGCAAAGCGGTAAGCTACTAAATATGGAGATGCAGCAACTGCTGAGCATGGGCTTCCCAGACGAGTTAGCCGCCGAAGCCTTGGCTGCTACCGGCGGGAAATCCACCATTAAAGCCACGGAATGGATCCTAACACACAAATCCTCTGCCACTTCCATCTCTAACCATGAGTCAAACCCAACCCAGAACTCAAACCCGTCTCCATTTCAGCCTAAGCTCGATCGCTTCTTCCATTTTCAATCCAAGCATCCCAGTGCCCCCTCTCGCTCGGTCACAGCCAGAGCCCAACCAATCGATCAAGAAGATGGAGAAGTAGAAGAATCAACCCCAAATTCGAGCCCATTATCCAAACGTGTTAAACTATCGCCATCTAGCTCCAAACAGAGGAATCCGTTCTTTTCGAACTCTATTCATCATCCAAAGAGTACACATAAGGATAAGAAAGAGTCCCACGAACCCTTATATGAGCGAATGCGTCCCAGAACCATAGATGATGTTATCGGTCAGGACCATCTCCTTGCAACTAATTCGCTCCTGCGGTCGGCAATTGAACGCGACCTTCTCCCTTCCATCATCTTCTGGGGTCCTCCTGGTACTGGTAAGACTTCTATTGCCAAAGCAATTGTTAATTCATCAACTTCATATAGACAACAATGCCCCTGTTATCGGTTTGTTTCATTATCTGCTGTGAGTAGCGGTGTTAGAGATGTAAGGGATGCAGTTGAAGAAGCTAGGAAATTAAGAGTTAAAAGTAATCAAAGAACTGTTTTGTTTGTGGATGAGGTTCACAGGTTTAACAAGTCTCAACAAGACTTTTTCTTACCCGTCATTGAAGATGGGAGTATTGTCTTCATTGGGGCCACCAGTGAGAACCCTTCTTTCCATTTGATTACACCATTGCTGTCTCGGTGTCGTATACTTACACTAAAGCCCTTGAAACCGTACCATGTTGGAATGATTCTAAAGGGCGCTATGAATAATTTGGACAAAGGATTGGTGCAAAGCGTTGGTTTCCAAGTTGATGTAAGTGAGGATGTAATTAATTTTATAGCCAACAACTGTGATGGTGATGCTCGGGTGGCTTTGAATGCCTTGGAGATTGCAGCTATTACAGCAGCTGCCCGGTTACAAGATGTTAAGCAATCTAAGGAGGTCACTGAAACAGAAGACATGAATGTTCAGATAAGCCAAGAAAGAAGGGTTGGTCCATCTGTTAATGTCCTTACCCTTGATGATGCAAAGGAGGCACTTCAGTGCAAGCACCTTGCATATGATAAAGCTGGGGAAGAGCATTATAATCTAATCAGTTCACTGCATAAATCAATGAGGGGAAGTGATGCTGATGCAGCAATTTATTGGTTGGCAAGAATGTTAGAAGGAGGAGAAGAGCCCCTTTACATTGCACGGAGACTCATAAGGTTTGCAAGTGAGGATGTTGGGTTGGCTGATCCATCTGCTCTCAGTCAGGCAGTTTCATGCTACCAAGCCTGTCACTTTTTGGGTATGCCTGAGTGCAATGTGATTCTAGCACAGTGTGTTGCTTTCTTGGCCTTAGCTCCTAAGTCTATCTCTGTTTATCGAGCAATAGAAGCTGCTCAGAAGGTAGTAAGGGAATCAATTGGAAAGAATGAGGGAGTACCTCTTCATCTGAGGAATGCGTCAACTAAACTAATGAAGGAACTTGGTTATGGGAAGGGATACATATACCCTCCTGACAATCCCTCTTCAACACAGAGCTACTTACCACCCTCACTACATGGGTACAAGTTCCTTGATTGGCCTAACAGGAATACATCTGATGGATAA 1977 0.4416 MLAALGFNRKTHIFVAGSNLYEGRSRLVGLISLYPNLVTKENLLSSAELEPFANYSSQQSGKLLNMEMQQLLSMGFPDELAAEALAATGGKSTIKATEWILTHKSSATSISNHESNPTQNSNPSPFQPKLDRFFHFQSKHPSAPSRSVTARAQPIDQEDGEVEESTPNSSPLSKRVKLSPSSSKQRNPFFSNSIHHPKSTHKDKKESHEPLYERMRPRTIDDVIGQDHLLATNSLLRSAIERDLLPSIIFWGPPGTGKTSIAKAIVNSSTSYRQQCPCYRFVSLSAVSSGVRDVRDAVEEARKLRVKSNQRTVLFVDEVHRFNKSQQDFFLPVIEDGSIVFIGATSENPSFHLITPLLSRCRILTLKPLKPYHVGMILKGAMNNLDKGLVQSVGFQVDVSEDVINFIANNCDGDARVALNALEIAAITAAARLQDVKQSKEVTETEDMNVQISQERRVGPSVNVLTLDDAKEALQCKHLAYDKAGEEHYNLISSLHKSMRGSDADAAIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPSALSQAVSCYQACHFLGMPECNVILAQCVAFLALAPKSISVYRAIEAAQKVVRESIGKNEGVPLHLRNASTKLMKELGYGKGYIYPPDNPSSTQSYLPPSLHGYKFLDWPNRNTSDG 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2756 658 CDD HLD_clamp_RarA 377 475 - -
Glsi08g2756 658 Gene3D - 579 657 - -
Glsi08g2756 658 FunFam Putative AAA family ATPase 475 578 - -
Glsi08g2756 658 Gene3D - 369 445 - -
Glsi08g2756 658 CDD AAA 224 363 - -
Glsi08g2756 658 SUPERFAMILY post-AAA+ oligomerization domain-like 485 654 IPR008921 GO:0003677|GO:0006260
Glsi08g2756 658 Gene3D - 198 368 IPR027417 -
Glsi08g2756 658 MobiDBLite consensus disorder prediction 108 210 - -
Glsi08g2756 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 455 IPR027417 -
Glsi08g2756 658 FunFam AAA-type ATPase family protein 369 446 - -
Glsi08g2756 658 Pfam AAA C-terminal domain 396 500 IPR032423 -
Glsi08g2756 658 MobiDBLite consensus disorder prediction 164 195 - -
Glsi08g2756 658 Gene3D - 67 105 - -
Glsi08g2756 658 SMART AAA_5 244 369 IPR003593 GO:0016887
Glsi08g2756 658 FunFam Replication-associated recombination protein A 201 368 - -
Glsi08g2756 658 SMART uba_6 64 102 IPR015940 -
Glsi08g2756 658 Pfam UBA/TS-N domain 69 100 IPR015940 -
Glsi08g2756 658 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 56 103 IPR015940 -
Glsi08g2756 658 MobiDBLite consensus disorder prediction 196 210 - -
Glsi08g2756 658 Pfam MgsA AAA+ ATPase C terminal 501 650 IPR021886 -
Glsi08g2756 658 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 66 655 - -
Glsi08g2756 658 Pfam ATPase family associated with various cellular activities (AAA) 248 363 IPR003959 GO:0005524|GO:0016887
Glsi08g2756 658 Gene3D - 475 578 - -
Glsi08g2756 658 SUPERFAMILY UBA-like 68 105 IPR009060 GO:0005515
Glsi08g2756 658 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2756 Glsi-ChrGlsi08 40977011 40980109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2756 210 501 Core DNA Replication Machinery Family AT1G77470 25.839 1.72e-10 61.2