Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2732 ATGCCGAGTCCTCAGCGTCAGCGTGAGTTTCAGACAACCACTGCAGACGATTCGTCCCTTCGGTATGACGAACAGCAAACACAACACCAGCATCGCACTGAAATTGCTGCCAATGGGCAATCCTCGATTAGAATTCCCCAGCCTTATCCACTTCCGAACGCCCTTTATGAGGACCTTACTCAGAGTTCAAAACTTTTCTGGGGAAAGCTTCAGCATTTTCATAAATCCTTATTCACCAAATTTAAAGTTCCTACTATAGGAGGAAAGCCGTTAGATCTATATGGCCTTTTTGTGGAAGTCACATCTCGTGGTGGGCTTGAAAAGGTGATAAGAGATCGTAGATGGAAGGAAGTGATTGCAGCCTTCAAATTCCCAGATACCATAACCAGTACATCATTTATATTGCGCAAATACTATCAATCATTGCTTTATGATTTCGAGCAGGTTTATTACTTTCAGAAGCAAGCCCCTTCTCTCTTGATGCTTGATCCTGTAAACAGGAGCAATGTCAATAGCTTAGCAAACATAAAGGAAGGTGCTGCCATGAATGATTTACCAGGTCAGGTTAGTCCAGTTGAGCTGCTTGGTTCTTTGGTGCCTGGAACCATTGATGTAAAGTTTGATGGTGGATATGTAGTTACAGTAAATCTGGGCTCTGAGCAACTGAAAGGTGTCCTGTATCATGTTCCTCTCAGTGCATCCCCTAGTTCTTATACTGCAGCCATGCCTAGTTCACAAATTCGGAAGAGATCAAGGTTGGCATTACGTGACCCATCTCGACCCAAGTCAAACAGGAGTGGCTACAATTTCTTCTTTGCTGAGCACTATGCCAGGCTAAAGCCTTCATACTATGGACAAGAGAGAGCAATTAGTAAGAAGATTGGGTTTCTGTGGAGCAATCTCACAGAAGCAGAAAGACAGATTTACCAGGAAAAAGGACGGAGAGATAAGGAGAGATACAGGACTGAAATGTTGGAGTACAGATCATCCAATAATTCAACTCCTCAGTAG 1011 0.4342 MPSPQRQREFQTTTADDSSLRYDEQQTQHQHRTEIAANGQSSIRIPQPYPLPNALYEDLTQSSKLFWGKLQHFHKSLFTKFKVPTIGGKPLDLYGLFVEVTSRGGLEKVIRDRRWKEVIAAFKFPDTITSTSFILRKYYQSLLYDFEQVYYFQKQAPSLLMLDPVNRSNVNSLANIKEGAAMNDLPGQVSPVELLGSLVPGTIDVKFDGGYVVTVNLGSEQLKGVLYHVPLSASPSSYTAAMPSSQIRKRSRLALRDPSRPKSNRSGYNFFFAEHYARLKPSYYGQERAISKKIGFLWSNLTEAERQIYQEKGRRDKERYRTEMLEYRSSNNSTPQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2732 336 ProSiteProfiles ARID domain profile. 60 151 IPR001606 GO:0003677
Glsi08g2732 336 CDD HMG-box_AtHMGB9-like 261 327 - -
Glsi08g2732 336 Gene3D - 53 161 IPR036431 GO:0003677
Glsi08g2732 336 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 261 328 IPR009071 -
Glsi08g2732 336 SMART bright_3 61 152 IPR001606 GO:0003677
Glsi08g2732 336 Gene3D High mobility group box domain 245 335 IPR036910 -
Glsi08g2732 336 Pfam HMG (high mobility group) box 261 328 IPR009071 -
Glsi08g2732 336 SUPERFAMILY ARID-like 58 157 IPR036431 GO:0003677
Glsi08g2732 336 MobiDBLite consensus disorder prediction 1 21 - -
Glsi08g2732 336 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 32 333 - -
Glsi08g2732 336 SUPERFAMILY HMG-box 248 332 IPR036910 -
Glsi08g2732 336 Pfam ARID/BRIGHT DNA binding domain 64 147 IPR001606 GO:0003677
Glsi08g2732 336 SMART ARID_2 57 147 - -
Glsi08g2732 336 SMART hmgende2 260 329 IPR009071 -
Glsi08g2732 336 MobiDBLite consensus disorder prediction 1 28 - -
Glsi08g2732 336 CDD ARID_HMGB9-like 62 147 IPR045303 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2732 Glsi-ChrGlsi08 34849134 34874805 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2732 54 333 ARID Transcription Factor Family AT3G13350 54.355 2.70e-104 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Glsi08g2732 ARID 1.3e-17 CL0123