Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2702 ATGGAGGATAGCCAGGTGGTGGTGGAATGGCAGGAAAGGGAGGCATCTCTTGAGACTATGAGGAAAAGGGAAAGGGAAAATCCTTGCGGGGTTTGTGGCCATTACCACAAGTATGAAGAAGGCGAAGTGTGTTCGATTTGCGGTCACCGTATTCCAGCCGCGTTGGAGAAAGTCCCGATCAAAGTTAGCGCCTTCCCTTCAGTGATTTTGCCGGAATTCCTATTCTTGGGAAGCTACGATAATGCATCGCACTCAGAGCTTCTGAAGGCTCAGGGAATCACTCATATCCTAAATACGGTTCCTTCTTCTCAAAATCTCTACAAAAACTCATTTACCTATTATTGCCTTCCAGATGACAAAAATTTACCATTTGATGTAGCAATTCAATTTCTAGAGCAATGTGAGAAGGACAAGGCACGTGTTCTGATTCATTGTATGTTAGGAAAGAATAGGTCTCCAGCTATTGTGATTGCATACTTGATGAAGTCCAAAGGATGGAGACTTGCACAGAGTTACAAGTGGGTAAAAGAGCGGAGGCCTTCTGTGGAATTAACAGAAGGTGTCTACCAGCAACTACTAGAGTATGAGAAGAAGATCTATGGATCGATTGATGGTGGCAGCTCTCTGCTGTCTGGGTTCCCACCTGCAGGGCCTCCTTCTGTTAGCTTTGGCTTCCCTAAGATTAATGACTTAGCTCCTCTTCCCGCCTTCAGCAGTGCTGGAGCTACCTCAATATTTGCCCAATCACCCCTAGACATTGCTCCAACTGAGTTTACATTTGGAGCTGGTCAGAATCAGAAGAATGTGACTGGAAGCCCATTTAATGCCAATCCACCTGACTCAATCGGTACTGATATCCAGATGGATGGTTCTTGA 876 0.4543 MEDSQVVVEWQEREASLETMRKRERENPCGVCGHYHKYEEGEVCSICGHRIPAALEKVPIKVSAFPSVILPEFLFLGSYDNASHSELLKAQGITHILNTVPSSQNLYKNSFTYYCLPDDKNLPFDVAIQFLEQCEKDKARVLIHCMLGKNRSPAIVIAYLMKSKGWRLAQSYKWVKERRPSVELTEGVYQQLLEYEKKIYGSIDGGSSLLSGFPPAGPPSVSFGFPKINDLAPLPAFSSAGATSIFAQSPLDIAPTEFTFGAGQNQKNVTGSPFNANPPDSIGTDIQMDGS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2702 291 FunFam Protein-tyrosine-phosphatase IBR5 55 205 - -
Glsi08g2702 291 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 122 190 IPR000387 GO:0016311|GO:0016791
Glsi08g2702 291 Gene3D Protein tyrosine phosphatase superfamily 60 204 IPR029021 -
Glsi08g2702 291 ProSiteProfiles Dual specificity protein phosphatase domain profile. 65 201 IPR020422 GO:0006470|GO:0008138
Glsi08g2702 291 SMART dsp_5 65 198 IPR020422 GO:0006470|GO:0008138
Glsi08g2702 291 MobiDBLite consensus disorder prediction 265 291 - -
Glsi08g2702 291 ProSitePatterns Tyrosine specific protein phosphatases active site. 143 153 IPR016130 GO:0016311|GO:0016791
Glsi08g2702 291 MobiDBLite consensus disorder prediction 265 284 - -
Glsi08g2702 291 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 20 291 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Glsi08g2702 291 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 66 200 IPR029021 -
Glsi08g2702 291 Pfam Dual specificity phosphatase, catalytic domain 74 197 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2702 Glsi-ChrGlsi08 30931760 30954744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2702 20 185 Protein tyrosine phosphatase (PTP) family AT2G04550 69.822 3.59e-89 261