Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2668 ATGGAAAACACAGACTGCAATGAACCCGAGAAGAAGAGGCCTCATTTGAGCTCAGTATCCTCCCCCGTGGCCCGGAATTCAACCAATCCATTGACCAATAACAAATGCGCTGATGTGGGAGTCTTGCAGTTCCAGAATCAGCAACTTGTTCAACAGATAGAAATCCAGAAACATGCATTGCATGATCTTGAAGTAAAAATTAGAGGCTTAAGAGATCGGCAAAATTCTTATGATGACATAATAATTGCCGTGAACCAACTCTGGAGTCAGTTGGTTGATGATATGATTCTTCTTGGCATACGAGCTGGGAGAGGACAAAATGCATTACAAAATTTGGACTACCCTGGTAATCCTCAAGGTTCATTTTCTTTGTGTCCTGCAGAGGATATCTTTCTTTGCAGGTTAATACAGAAGGATTCTATTGAAGCCAGCAGTAAAGATGAGATTGTTAATTATGTTGAAAATGCCCTTGCTTTGCGTCAGTCATCTACACAGGAGTTGTTGAAACTCCTTGAAGATACCATTGATGCTCAGAGGGAAAGAACTTACTGTATTGCCCAGGGCTTGCACGGAGAATCAACTTCAGAAGATGCTATCATCCAAATGTCTAAGTTCGATGATATGATGAAAGAGGAGGCAAACAATTTATGTGAAGCGATTGACGCTCTTCATGCGAAGCACAAAGAATATACTGTTGGTATTCAAACTTATATTAGCAGCCAATTACAGGATCAATCTGAGATTAAACGCCTTGCAGGTGAGCTTGATGAGAGCATGGCTGAACTTGAAGAGAGTAGAAGAAAACTAGTCAATCTAAAAATGCAAAAGGATGCAGCAGTAGGGATGCATTCCCCCAATTTAGGGGCAGTGAACGGAAACTTGTCTCCTGAAAAGCCTGCAGATAGGACAATGGGTTCGCGAGAGTTGAAGGATTCAATTGAGGAAGCAAAGATAGTGGCTGCTGACCGTCTTTCAGAGCTTCAAGAAGCAGAGGAAGAACATGTGACCTTGACAAGGCAATTGCAAGAACTTCAGAATGAACTGAATGATGAAAAGTATGTATGCTCATCTCGAATCTACTCTTTGGTAAATGATCAACTGCAACATTGGAAGACTGAATTGGATCGGTATAAAGCATTGACAGAGTCTCTGCAGGCTGAAAGGGTTCATGTCACAAAATGGGAGAAGGAACTGAACTCAAAATTGGAGTCTGCAGATACTGCAAGGCATACAGTTGACAGTTCTGATTGTAGGACTGAAGAACTAGAGATTCAATTACAGAAGTGTACTATTGAAAAGAATGATCTTGAAATTAAGATGGAAGAGGCTAGACAGGATACTGGGAGAAAAGATGTTAAATCTGAGTTTCATGTGATGGCTTCAGCTTTATCTAAAGAAATGGGAATGATGGAAGCTCAATTGAAACGATGGAAGGATGCAGCTCATGAGGCAGTTTCGTTACGTGAGAAAGTGAATTCACTAAGATCTTTGTTAAGTGGGAAGACAAGCGATCTAAAGAGCTTAGCAAACAAATGTGCTGAACAGGTTGTGGAGATAAATTCTTTAAAAATATTGATTGAAAAGTTGCAGAAGGAAAAACTGGAATTACAAATCTTTCTGGATTTGCACGGACAGGAGAATTATGATAGAAGAGGTTTGATAGAAGTCAGAGAATCAGAATGTAAAGCTCAATCTCAAGCTGAAGTACTGAAAAATGCTTTAGATGAACATAGTTTAGAATTGAGAGTAAAAGCCGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTTCTGTTGCGGAAGCTGAAATAGAGGATTTAAGGGCCAAGCTGGATGCTTCTGAAAGAGATATTTTGGAACTGACTGAGGCTATTAAAGTTAAGGATGCTGAGGCAGAAGCATATATATCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAAACACAGAACCAACATCTGTTGCATCAGGTTACTGAGAGGGATGACTATAATATCAAGCTTGTGTCAGAAAGCGTGAAGACAAAACAGGTACATAGCACTTTAATATCTGAGAAACAGGCGTTGGCAAAGCAACTTCAACAAATTAATGCTTCAATAGAAACTTTAAAGATGAGGATTACACACAGTGAAGACCAGATGAAAGCTCTTTTATCAGAAGCCATTAAATCTACTCAAGATGAAAAGCACATTGCAGTCACCTTGGAATCTGCAAAATGGGAGTTGGCTGATGCTGAAAAGGAGTTGAAGTGGCTCAAGTCTGCTGTCGCTGCTTCTGAGAAAGAATATGATCAAATTCAGAAAGACATGGAAGCTATCCAAATGGAATTGGATAGTGAAAGGAGTTCAAGAAAGAAGCTTGAGGATGAACTCGGGGAATTAAACAACAAAATTGCTGAGATGAGTTCTGAAACTGGAGAGGCAGCAATTCAGAAACTTCAAGATGAAATTAGGGTTTGCAAGAACATGATCAAGTGTACTGTCTGTTCTGATCGTCCAAAAGAGGTTGTGATTGTCAAGTGCTATCATCTGTTCTGCAATCCATGCATCCAAAGAAACTTAGAACTCCGTCATCGCAAGTGTCCCGCCTGTGGAACTGCATTTGGTCAGAGTGACGTTCGGTTTGTGAAAATATGA 2643 0.4011 MENTDCNEPEKKRPHLSSVSSPVARNSTNPLTNNKCADVGVLQFQNQQLVQQIEIQKHALHDLEVKIRGLRDRQNSYDDIIIAVNQLWSQLVDDMILLGIRAGRGQNALQNLDYPGNPQGSFSLCPAEDIFLCRLIQKDSIEASSKDEIVNYVENALALRQSSTQELLKLLEDTIDAQRERTYCIAQGLHGESTSEDAIIQMSKFDDMMKEEANNLCEAIDALHAKHKEYTVGIQTYISSQLQDQSEIKRLAGELDESMAELEESRRKLVNLKMQKDAAVGMHSPNLGAVNGNLSPEKPADRTMGSRELKDSIEEAKIVAADRLSELQEAEEEHVTLTRQLQELQNELNDEKYVCSSRIYSLVNDQLQHWKTELDRYKALTESLQAERVHVTKWEKELNSKLESADTARHTVDSSDCRTEELEIQLQKCTIEKNDLEIKMEEARQDTGRKDVKSEFHVMASALSKEMGMMEAQLKRWKDAAHEAVSLREKVNSLRSLLSGKTSDLKSLANKCAEQVVEINSLKILIEKLQKEKLELQIFLDLHGQENYDRRGLIEVRESECKAQSQAEVLKNALDEHSLELRVKAANEAEAACEQRLSVAEAEIEDLRAKLDASERDILELTEAIKVKDAEAEAYISEIETIGQAYEDMQTQNQHLLHQVTERDDYNIKLVSESVKTKQVHSTLISEKQALAKQLQQINASIETLKMRITHSEDQMKALLSEAIKSTQDEKHIAVTLESAKWELADAEKELKWLKSAVAASEKEYDQIQKDMEAIQMELDSERSSRKKLEDELGELNNKIAEMSSETGEAAIQKLQDEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2668 880 MobiDBLite consensus disorder prediction 282 303 - -
Glsi08g2668 880 MobiDBLite consensus disorder prediction 1 15 - -
Glsi08g2668 880 Coils Coil 367 387 - -
Glsi08g2668 880 Coils Coil 737 806 - -
Glsi08g2668 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Glsi08g2668 880 PANTHER RING FINGER PROTEIN-RELATED 9 880 IPR013956 GO:0004842|GO:0010390
Glsi08g2668 880 Coils Coil 583 624 - -
Glsi08g2668 880 Coils Coil 688 722 - -
Glsi08g2668 880 Coils Coil 313 354 - -
Glsi08g2668 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 869 - -
Glsi08g2668 880 Coils Coil 46 73 - -
Glsi08g2668 880 MobiDBLite consensus disorder prediction 1 31 - -
Glsi08g2668 880 CDD RING-HC_Bre1-like 820 876 - -
Glsi08g2668 880 Coils Coil 419 446 - -
Glsi08g2668 880 SMART ring_2 828 866 IPR001841 -
Glsi08g2668 880 Coils Coil 512 532 - -
Glsi08g2668 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Glsi08g2668 880 SUPERFAMILY RING/U-box 827 871 - -
Glsi08g2668 880 Coils Coil 248 275 - -
Glsi08g2668 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 879 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2668 Glsi-ChrGlsi08 29597504 29649886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2668 801 875 RAD5 or RAD16-like Gene Family AT5G05130 25.000 9.48e-07 50.8