Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2666 ATGCGACGAGGCAGAGCCGCAGATCCAAACGCAGCAGCAGCAACCACCAAAGCAATCGGTCAAGAATCCAAAAACCCAGTTAAGGAAATCAGATTCAGAGGCGTCAGAAAGCGTCCATGGGGTCGATTCGCTGCCGAGATCAGGGATCCATGGAGGAAGGCACGGGTCTGGCTCGGCACCTTCGATTCGGCCGAGGACGCCGCTCGGGCTTACGACGCTGCGGCTCTTTCGTTTCGTGGACTAAAGGCTAAGACCAATTTCCCCTTGGCGAATCTTGAATCGGGTATGTCTCAGATTCCTTTGTATCACCGAGATTTCGAAGATCACCGTCATGGGTTTTCGAAGTTCGATCCTGTTCAGGTGAATCGGCCAACCACGAGCAGTATGAGCAGCACTGTCGAATCCTTCAGCGGGCCTAGGGTCTCCAACCCGATTCCGTCGATTCCGAGGGTCCCGCGGAGACCCGTGAACCCGGTTCCACCGGATGATTGTCACAGCGATTGCGATTCTTCCTCCTCGGTGGTCGACGATGAAGATTGTGTGCTCACTTCTTCCTTCCGCAAAATTATGCCTTTTGATCTGAACCGCCCGCCGCCTATGGATGACGACGAAATCACCGCCGATGACCTTCAAGCCACCGCCTTATGTCTCTGA 654 0.5474 MRRGRAADPNAAAATTKAIGQESKNPVKEIRFRGVRKRPWGRFAAEIRDPWRKARVWLGTFDSAEDAARAYDAAALSFRGLKAKTNFPLANLESGMSQIPLYHRDFEDHRHGFSKFDPVQVNRPTTSSMSSTVESFSGPRVSNPIPSIPRVPRRPVNPVPPDDCHSDCDSSSSVVDDEDCVLTSSFRKIMPFDLNRPPPMDDDEITADDLQATALCL 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2666 217 MobiDBLite consensus disorder prediction 117 155 - -
Glsi08g2666 217 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 181 - -
Glsi08g2666 217 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Glsi08g2666 217 MobiDBLite consensus disorder prediction 119 142 - -
Glsi08g2666 217 CDD AP2 31 88 IPR001471 GO:0003700|GO:0006355
Glsi08g2666 217 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Glsi08g2666 217 Gene3D AP2/ERF domain 30 90 IPR036955 GO:0003700|GO:0006355
Glsi08g2666 217 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Glsi08g2666 217 FunFam Ethylene-responsive transcription factor 2 31 89 - -
Glsi08g2666 217 MobiDBLite consensus disorder prediction 1 25 - -
Glsi08g2666 217 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Glsi08g2666 217 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Glsi08g2666 217 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2666 Glsi-ChrGlsi08 29593372 29594025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2666 1 217 AP2-EREBP Transcription Factor Family AT1G50640 54.852 3.74e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi08g2666 AP2 7.8e-14 CL0081