Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2664 ATGCCAGAAAACCGGCAGGTTCAGAAGAATGCCGCTTCTAATCTATCTGGTGATACCATTGAAGTTACTGATCATCGTTTTTCTCAGGCCTCTGTTGTGTTTGTTGGAAAAGTTGGATTCCTTTTGTTTTTGATATTTTATTTTGATGAAGCCATTTGGCGTTTGAAAATCAATGATAATCGGGACAGAAATGCTGCAGCTCAATCAACCCAATATCCGGATCGACCTGGTGAACCTGACTGCTTATATTACTTGAGGACTGGGTTGTGTGGTTATGGGAGTAACTGTCGCTATAATCACCCTGCTCATGTTGGACTTGGTGTTCAATATGCTGAAGAACTCCCTGAGAGAACTGGACAACCTGATTGCGGGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCAACATGTAAATATCATCATCCAAGGGACAGACGAGGTGCCAGTCCTGTATCCCTCAATGTTTTAGGTCTTCCCATGCGTCAGCCTGGCTCCCTTGGAACTGCCCCTGCAGCTGGATCTCCTGCCTCAACAATTATTCCTCCACCTGGTTCACCATATGTTGGTGGGCTTCCCGCATGGTCATTACCGAGAATGTCATATTTATCTGGGCAGGGTCTTCAATCTTACATGCCTGCTTTTCTTTCTTCTCCACAAGGCATTATACCTTCACCGAGCTGGAACAACTACATGGGAAGTATGAAATCTGCAATGCCTACCAGTTCTTTTGGATCTAATCTTGTCTACAACTTCTTTAAACTCTGTGAGTCAATTTCTGGTATGCAGGTTAATTTATCAAGTCCAACTCTCCCAGAGAGGCCTGATCAACCAGAATGTCGATACTTTATGAACACTGGCACCTGCAAATATGGTTCTGATTGCAAGTTCCACCACCCTAAAGAAAGAGTCACCCAATCAATGATTAATCCACTTGGCCTTCCTGTGAGACCTGGGCAAGCTATTTGTTCTTATTACAGAACCTATGGAATATGCAAGTATGGCCCAACTTGCAAATATGATCATCCAGTTTTGGCAATCCCTCAGAACTATGGCTTGAGCCCACCTGCTTTATCTGTACTTGATACATCATTCATAAGTAATCCAACAGGCTTGTCAACTATTAACCCTAAACCATCCGAGACATTGCAATCTAAATTATCAAGGGGCAAGATTCAGCACTCTGATACAAACTCTTCAGAAGATTCACCAAAACAAGCTGATACTACACCAGATTCCTTCCCTGCCTCCTCGGAGTCTTTACACGATTAA 1272 0.4316 MPENRQVQKNAASNLSGDTIEVTDHRFSQASVVFVGKVGFLLFLIFYFDEAIWRLKINDNRDRNAAAQSTQYPDRPGEPDCLYYLRTGLCGYGSNCRYNHPAHVGLGVQYAEELPERTGQPDCGYFLKTGTCKYGSTCKYHHPRDRRGASPVSLNVLGLPMRQPGSLGTAPAAGSPASTIIPPPGSPYVGGLPAWSLPRMSYLSGQGLQSYMPAFLSSPQGIIPSPSWNNYMGSMKSAMPTSSFGSNLVYNFFKLCESISGMQVNLSSPTLPERPDQPECRYFMNTGTCKYGSDCKFHHPKERVTQSMINPLGLPVRPGQAICSYYRTYGICKYGPTCKYDHPVLAIPQNYGLSPPALSVLDTSFISNPTGLSTINPKPSETLQSKLSRGKIQHSDTNSSEDSPKQADTTPDSFPASSESLHD 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2664 423 SMART c3hfinal6 75 102 IPR000571 GO:0046872
Glsi08g2664 423 SMART c3hfinal6 274 301 IPR000571 GO:0046872
Glsi08g2664 423 SMART c3hfinal6 317 344 IPR000571 GO:0046872
Glsi08g2664 423 SMART c3hfinal6 117 144 IPR000571 GO:0046872
Glsi08g2664 423 ProSiteProfiles Zinc finger C3H1-type profile. 117 145 IPR000571 GO:0046872
Glsi08g2664 423 SUPERFAMILY CCCH zinc finger 277 303 IPR036855 GO:0046872
Glsi08g2664 423 SUPERFAMILY CCCH zinc finger 122 146 IPR036855 GO:0046872
Glsi08g2664 423 PANTHER PROTEIN PHOSPHATASE RELATED 50 163 - -
Glsi08g2664 423 Gene3D - 74 153 - -
Glsi08g2664 423 Gene3D - 272 352 - -
Glsi08g2664 423 ProSiteProfiles Zinc finger C3H1-type profile. 75 103 IPR000571 GO:0046872
Glsi08g2664 423 SUPERFAMILY CCCH zinc finger 315 343 IPR036855 GO:0046872
Glsi08g2664 423 ProSiteProfiles Zinc finger C3H1-type profile. 274 302 IPR000571 GO:0046872
Glsi08g2664 423 SUPERFAMILY CCCH zinc finger 80 102 IPR036855 GO:0046872
Glsi08g2664 423 ProSiteProfiles Zinc finger C3H1-type profile. 317 345 IPR000571 GO:0046872
Glsi08g2664 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 119 144 IPR000571 GO:0046872
Glsi08g2664 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 319 343 IPR000571 GO:0046872
Glsi08g2664 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 301 IPR000571 GO:0046872
Glsi08g2664 423 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 77 101 IPR000571 GO:0046872
Glsi08g2664 423 MobiDBLite consensus disorder prediction 370 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2664 Glsi-ChrGlsi08 29536076 29539960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2664 48 418 C3H Transcription Factor Family AT1G04990 42.716 4.40e-92 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi08g2664 zf-CCCH 1.7e-08 CL0537