Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g2658 ATGATTTACTACTCTTATAACTCTAACTCTTCATCTGGGTCTGATATTTCGAGAATATTCAATCCAATTTCGCATAACCTTGGTGATTCTGATGATTTTTCGCCAAGTGGGTTGGCATCACCGCATTCGTTGGTTCTTAACAGTGAGAAGAGGGAGCTAGTGAAGTCCCCTAGAAGGATAGGAAAGAAAAGGGTATCTGATGCAAAAGCTTTAGCGGCTATGAAGAGCCATAGTGAAGCAGAGAGGAGGAGAAGGGAGAGAATAAATGGTCATCTTGCTACACTTCGTGGTCTTGTGCCCTGCAATGAAAAGGTATGGTGTAGCACCCAGCAGACTGGGGACTTGACAAAGTCTGATAGAGCAGTTGATGGGATATTTGGATTTGGGCAACAGGACATGTCTGTCATCTCCCAGCTATCCTCACAAGGCATAGCGCCAAGAGCATTCTCCCACTGTCTGAAAGGAGATAGTGCTAGTGGGGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAATATAGTTTATACTCCACTTGTTCCATCACAGCCTCATTACAATTTAAATCTGCAGAGCATATCTGTCAATGGCCAAATACTATCAATTGATTCAGAAGTTTTTGCAACATCAAGCAATCGAGGTACCATTATTGATTCTGGAACAACTTTGGCATACTTTGCAGAAGGGGCTTATGATCCCTTTGTCAGTGTGTTATCTAGAGGGGTCGAGCCCATTGATAAATGGACTATACTAAACAAGTTTTCTGGGCCTGCTCCAATCTTCTATTTACTGGTGGGTACATGGGTCCAATGCCGACATTGGTCCAACTCAATTAAAGTGCATGAGATGTTCACGAAACCTATCCATATCCTCAAAATCATTGGTGCTGCCTTTGATGGCTACGTTTTCTGCAGAAGAAACCAAAGCATATGCTCCTGTACCAAGGTCAAACCAACCATACTGTGCCAGCTTTTGGCCTTTTTTGAGAAACCAAGTCATATGCAGAAGAAACCAAGGCCTTAG 1020 0.4324 MIYYSYNSNSSSGSDISRIFNPISHNLGDSDDFSPSGLASPHSLVLNSEKRELVKSPRRIGKKRVSDAKALAAMKSHSEAERRRRERINGHLATLRGLVPCNEKVWCSTQQTGDLTKSDRAVDGIFGFGQQDMSVISQLSSQGIAPRAFSHCLKGDSASGGILVLGEIVEPNIVYTPLVPSQPHYNLNLQSISVNGQILSIDSEVFATSSNRGTIIDSGTTLAYFAEGAYDPFVSVLSRGVEPIDKWTILNKFSGPAPIFYLLVGTWVQCRHWSNSIKVHEMFTKPIHILKIIGAAFDGYVFCRRNQSICSCTKVKPTILCQLLAFFEKPSHMQKKPRP 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g2658 339 Pfam Xylanase inhibitor C-terminal 184 241 IPR032799 -
Glsi08g2658 339 Gene3D Acid Proteases 93 166 IPR021109 -
Glsi08g2658 339 SMART finulus 78 134 IPR011598 GO:0046983
Glsi08g2658 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 102 IPR036638 GO:0046983
Glsi08g2658 339 PANTHER ASPARTYL PROTEASES 107 239 IPR001461 GO:0004190|GO:0006508
Glsi08g2658 339 Pfam Xylanase inhibitor N-terminal 107 166 IPR032861 -
Glsi08g2658 339 SUPERFAMILY Acid proteases 99 243 IPR021109 -
Glsi08g2658 339 Gene3D Acid Proteases 167 259 IPR021109 -
Glsi08g2658 339 Pfam Helix-loop-helix DNA-binding domain 76 112 IPR011598 GO:0046983
Glsi08g2658 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 128 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g2658 Glsi-ChrGlsi08 29341805 29348636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g2658 107 242 Miscellaneous Gene Families AT1G44130 24.638 3.99e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi08g2658 TAXi_C 7.5e-08 CL0129